Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Selaginella_20moellendorffii_20[refseq_20GCF_5F000143415.3_202010- 07-06] 758 sequences; 212,501,708 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq59 104 2e-17 seq32 104 2e-17 seq317 98.7 8e-16 seq147 98.7 8e-16 seq145 98.7 8e-16 seq24 95.1 1e-14 seq125 89.7 4e-13 seq44 89.7 4e-13 seq6 86.0 5e-12 >seq59 Length=1263218 Score = 104 bits (114), Expect = 2e-17 Identities = 153/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||||||||| ||||| || | ||||| || || || ||| | || |||| ||| | Sbjct 502890 ATGCAAATTTTCGTCAAGACCCTCACAGGGAAGACGATCACCTTGGAGGTGGAGAGCTCG 502831 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 || || ||| | | || || ||||| || || |||||| | ||| ||| || Sbjct 502830 -GACACGATCGACAACGTGAAGACCAAGATCCAGGACAAGGAAGGCATCCCCCCGGACCA 502772 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||| || | || | || || || ||||| ||||||| | || | ||||||||||| Sbjct 502771 GCAGCGATTGATCTTCGCAGGCAAGCAGCTTGAGGACGGCCGCACTCTTGCGGACTACAA 502712 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTGTTG 107768 ||| ||||||||||||||| | ||| |||| ||| Sbjct 502711 CATCCAAAAGGAGTCTACGCTTCACCTGGTTTTG 502678 >seq32 Length=1846953 Score = 104 bits (114), Expect = 2e-17 Identities = 153/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||||||||| ||||| || | ||||| || || || ||| | || |||| ||| | Sbjct 247735 ATGCAAATTTTCGTCAAGACCCTCACAGGGAAGACGATCACCTTGGAGGTGGAGAGCTCG 247794 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 || || ||| | | || || ||||| || || |||||| | ||| ||| || Sbjct 247795 -GACACGATCGACAACGTGAAGACCAAGATCCAGGACAAGGAAGGCATCCCCCCGGACCA 247853 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||| || | || | || || || ||||| ||||||| | || | ||||||||||| Sbjct 247854 GCAGCGATTGATCTTCGCAGGCAAGCAGCTTGAGGACGGCCGCACTCTTGCGGACTACAA 247913 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTGTTG 107768 ||| ||||||||||||||| | ||| |||| ||| Sbjct 247914 CATCCAAAAGGAGTCTACGCTTCACCTGGTTTTG 247947 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||||||||| ||||| || |||| || || || ||||| |||| |||| ||| Sbjct 247279 ATGCAAATTTTCGTCAAGACCCTAACGGGGAAGACGATTACGCTCGAGGTGGAGAGCTC- 247337 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||| || ||| | | || || ||||| || || |||||| | || ||| || Sbjct 247338 CGACACGATCGACAACGTTAAGACCAAGATCCAGGACAAGGAAGGCATCCCTCCGGACCA 247397 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||| || | || | ||| || || ||||| || || | | || |||| |||||||| Sbjct 247398 GCAGCGATTGATCTTTGCCGGCAAGCAGCTAGAAGATGGCCGGACTCTGGCCGACTACAA 247457 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGT 107764 ||| |||||||| || ||| | || |||| Sbjct 247458 CATCCAAAAGGAATCCACGCTCCATTTGGT 247487 >seq317 Length=11171 Score = 98.7 bits (108), Expect = 8e-16 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||| || ||||| ||||| | || ||||| || || || |||| |||| ||| | Sbjct 9596 ATGCAGATCTTTGTGAAAACCCTGACTGGCAAGACGATCACTCTCGAGGTGGAGAGCTCG 9655 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 || || ||| | | || || |||||| || || ||||| | || ||| || Sbjct 9656 -GACACCATCGACAATGTTAAGACGAAGATTCAGGACAAGGAAGGGATTCCTCCGGACCA 9714 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||| | || || | ||| ||||| ||||| ||||||| || || ||||||||||||| Sbjct 9715 GCAGCGTCTCATCTTTGCAGGTAAGCAGCTAGAGGACGGCAGGACCTTGGCGGACTACAA 9774 Query 107735 CATTCAAAAGGAGTCTAC 107752 ||| || ||||||||||| Sbjct 9775 CATCCAGAAGGAGTCTAC 9792 Score = 93.3 bits (102), Expect = 3e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||| || ||||| ||||| | || ||||| || || || |||| |||| ||| | Sbjct 1585 ATGCAGATCTTTGTGAAAACCCTGACTGGCAAGACGATCACTCTCGAGGTGGAGAGCTCG 1644 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 || || | | | | || || |||||| || || ||||| | || ||| || Sbjct 1645 -GACACCATTGACAACGTTAAGACGAAGATTCAGGACAAGGAAGGGATTCCTCCGGACCA 1703 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||| | || || | ||| ||||| ||||| ||||||| || || ||||||||||||| Sbjct 1704 GCAGCGTCTCATCTTTGCAGGTAAGCAGCTAGAGGACGGCAGGACCTTGGCGGACTACAA 1763 Query 107735 CATTCAAAAGGAGTCTAC 107752 ||| || ||||||||||| Sbjct 1764 CATCCAGAAGGAGTCTAC 1781 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||| ||||| ||||| ||| | || ||||| ||||| ||| | || |||| ||| | Sbjct 2497 ATGCAGATTTTCGTCAAGACTCTCACCGGCAAGACCATCACCCTGGAGGTGGAGAGCTCG 2556 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 || || ||| | | || || ||||| |||||||||||| | || ||| || Sbjct 2557 -GACACCATCGACAATGTGAAGACCAAGATCCAGGATAAAGAAGGCATTCCTCCGGACCA 2615 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||| | || || | ||| || || ||||| ||||| | || ||||||| || || Sbjct 2616 GCAGCGTCTCATCTTTGCCGGGAAGCAGCTCGAGGATGGGCGTACCCTGGCGGATTATAA 2675 Query 107735 CATTCAAAAGGAGTCTAC 107752 ||| || |||||||| || Sbjct 2676 CATCCAGAAGGAGTCCAC 2693 >seq147 Length=303747 Score = 98.7 bits (108), Expect = 8e-16 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||| || ||||| ||||| | || ||||| || || || |||| |||| ||| | Sbjct 247012 ATGCAGATCTTTGTGAAAACCCTGACTGGCAAGACGATCACTCTCGAGGTGGAGAGCTCG 247071 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 || || ||| | | || || |||||| || || ||||| | || ||| || Sbjct 247072 -GACACCATCGACAATGTTAAGACGAAGATTCAGGACAAGGAAGGGATTCCTCCGGACCA 247130 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||| | || || | ||| ||||| ||||| ||||||| || || ||||||||||||| Sbjct 247131 GCAGCGTCTCATCTTTGCAGGTAAGCAGCTAGAGGACGGCAGGACCTTGGCGGACTACAA 247190 Query 107735 CATTCAAAAGGAGTCTAC 107752 ||| || ||||||||||| Sbjct 247191 CATCCAGAAGGAGTCTAC 247208 >seq145 Length=315748 Score = 98.7 bits (108), Expect = 8e-16 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||| || ||||| ||||| | || ||||| || || ||| |||| |||| ||| | Sbjct 113846 ATGCAGATCTTTGTGAAAACCCTCACCGGCAAGACGATCACCCTCGAGGTGGAGAGCTCG 113905 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 || || ||| | | || || |||||| || |||||||| | || ||| || Sbjct 113906 -GACACCATCGACAATGTTAAGACGAAGATTCAGGACAAAGAAGGGATTCCTCCGGACCA 113964 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||| | || || | || ||||| ||||| ||||||| || || ||||||||||||| Sbjct 113965 GCAGCGTCTCATCTTCGCTGGTAAGCAGCTAGAGGACGGCAGGACCTTGGCGGACTACAA 114024 Query 107735 CATTCAAAAGGAGTCTAC 107752 ||| || |||||||| || Sbjct 114025 CATCCAGAAGGAGTCGAC 114042 >seq24 Length=2034879 Score = 95.1 bits (104), Expect = 1e-14 Identities = 151/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||||||||| ||||| || | ||||| || || || ||| | || |||| ||| | Sbjct 499148 ATGCAAATTTTCGTCAAGACCCTCACAGGGAAGACGATCACCTTGGAGGTGGAGAGCTCG 499207 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 || || ||| | | || || ||||| || || |||||| | ||| ||| || Sbjct 499208 -GACACGATCGACAACGTGAAGACCAAGATCCAGGACAAGGAAGGCATCCCCCCGGACCA 499266 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||| || | || | || || || ||||| ||||||| | || | ||||||||||| Sbjct 499267 GCAGCGATTGATCTTCGCAGGCAAGCAGCTTGAGGACGGCCGCACTCTTGCGGACTACAA 499326 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTGTTG 107768 ||| || |||||||||||| | || |||| ||| Sbjct 499327 CATCCAGAAGGAGTCTACGCTTCATCTGGTTTTG 499360 >seq125 Length=444406 Score = 89.7 bits (98), Expect = 4e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||| ||||| ||||| ||| | || ||||| ||||||||| | || |||| ||| | Sbjct 271513 ATGCAGATTTTCGTCAAGACTCTCACCGGCAAGACCATTACCCTGGAGGTGGAGAGCTCG 271572 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 || || ||| | | || || ||||| |||||||||||| | || ||| || Sbjct 271573 -GACACCATCGACAATGTGAAGACCAAGATCCAGGATAAAGAAGGCATTCCTCCGGACCA 271631 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||| | || || | ||| || || ||||| ||||| | || ||||||| || || Sbjct 271632 GCAGCGTCTCATCTTTGCCGGGAAGCAGCTCGAGGATGGGCGTACCCTGGCGGATTATAA 271691 Query 107735 CATTCAAAAGGAGTCTAC 107752 ||| || |||||||| || Sbjct 271692 CATCCAGAAGGAGTCGAC 271709 >seq44 Length=1658729 Score = 89.7 bits (98), Expect = 4e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||| || ||||| ||||| | || ||||| || || ||| |||| |||| ||| | Sbjct 1444303 ATGCAGATCTTTGTGAAAACCCTCACCGGCAAGACGATCACCCTCGAGGTGGAGAGCTCG 1444244 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 || || ||| | | || || |||||| || || ||||| | || ||| || Sbjct 1444243 -GACACCATCGACAATGTTAAGACGAAGATTCAGGACAAGGAAGGAATTCCTCCGGACCA 1444185 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||| | || || | || ||||| ||||| ||||||| || || | ||||||||||| Sbjct 1444184 GCAGCGTCTCATCTTCGCTGGTAAGCAGCTAGAGGACGGCAGGACCTTAGCGGACTACAA 1444125 Query 107735 CATTCAAAAGGAGTCTAC 107752 ||| || |||||||| || Sbjct 1444124 CATCCAGAAGGAGTCGAC 1444107 >seq6 Length=4135178 Score = 86.0 bits (94), Expect = 5e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 |||||||| || || || || | |||||||| ||||| || |||| |||| ||| | Sbjct 622496 ATGCAAATCTTCGTGAAGACCCTGACAGGCAAGACCATCACTCTCGAGGTGGAGAGCTCG 622555 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 || || ||| | | || || |||||| || || || || | || || || Sbjct 622556 -GACACCATCGACAACGTCAAGACAAAGATCCAGGACAAGGAGGGAATCCCACCTGACCA 622614 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||| | || || | |||||| || ||||| ||||| | || ||||||||||||| Sbjct 622615 GCAGCGTCTCATCTTTGCGGGGAAGCAGCTCGAGGATGGACGCACCCTGGCGGACTACAA 622674 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 ||| || |||||||| ||| | ||| ||||| Sbjct 622675 CATCCAGAAGGAGTCGACGCTCCACCTGGTG 622705 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398873115126262