Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Selaginella_20moellendorffii_20[refseq_20GCF_5F000143415.3_202010- 07-06] 758 sequences; 212,501,708 total letters Query= NC_023584.1 Length=170438 Score E Sequences producing significant alignments: (Bits) Value seq758 664 0.0 >seq758 Length=186484 Score = 664 bits (736), Expect = 0.0 Identities = 740/985 (75%), Gaps = 2/985 (0%) Strand=Plus/Plus Query 157051 TTCTGCGAGTGGGTAACTTCCACCAACAACCGTTTGTATGTTGGTTGGTTCGGTGTGCTT 157110 |||||||| ||| | || |||| | || || | || |||| ||||||||||| || Sbjct 93109 TTCTGCGATTGGATCACCAGCACCGAAAATCGCCTTTACATTGGGTGGTTCGGTGTACTG 93168 Query 157111 ATGATTCCAACATTGCTTGCAGCAACTATCTGCTTCATTGTTGCATTCGTAGCAGCACCT 157170 ||||| || || || | | ||||| | |||||| ||| || | ||||| || Sbjct 93169 ATGATCCCGACCCTGTTAACTGCAACCTCCGTATTCATTACTGCTTTTATCGCAGCTCCG 93228 Query 157171 CCCGTTGATATCGACGGTATTCGCGAACCAGTTGCTGGTTCTCTCATGTATGGCAACAAC 157230 || || ||||| |||||||||||||| || ||| |||||||||| || || || ||||| Sbjct 93229 CCAGTAGATATTGACGGTATTCGCGAGCCCGTTTCTGGTTCTCTTATATACGGGAACAAT 93288 Query 157231 ATCATCTCTGGTGCAGTTGTTCCTTCTTCAAACGCAATCGGTCTTCACTTCTACCCCATC 157290 || ||||||||||| || | || | || ||| |||||| | |||||||||||||| Sbjct 93289 ATAATCTCTGGTGCTATTATCCCCACCTCCGCCGCTATCGGTTTGCACTTCTACCCCATT 93348 Query 157291 TGGGAAGCAGCATCACTTGATGAGTGGCTTTACAACGGTGGTCCTTTCCAACTGGTAGTC 157350 |||||||| ||||| ||||||| ||||| |||||||| ||||| | | |||| | || Sbjct 93349 TGGGAAGCGGCATCTATTGATGAATGGCTATACAACGGCGGTCCCTACGAACTAATCGTT 93408 Query 157351 TTTCACTTCCTGATCGGCATCTATGCCTATATGGGACGTGAGTGGGAACTTTCTTACCGT 157410 ||||||||||| | || | | ||| ||||| ||||||||||||||| | ||| Sbjct 93409 CTTCACTTCCTGCTTGGAGTAGCTTGCTACATGGGTCGTGAGTGGGAACTTAGCTTCCGC 93468 Query 157411 TTAGGTATGCGCCCCTGGATCTGTGTTGCCTACTCGGCACCAGTCGCTGCTGCGAGTGCA 157470 || ||||||||||| |||||| |||||| ||||| || || || || || || | || Sbjct 93469 TTGGGTATGCGCCCTTGGATCGCTGTTGCGTACTCAGCCCCTGTTGCAGCCGCCACCGCC 93528 Query 157471 GTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCCGATGCTATGCCTCTTGGTATC 157530 || || | |||| ||| | |||||||| |||||||| | ||||||| | || ||| Sbjct 93529 GTTTTTTTGATCTACCCTATTGGTCAAGGAAGCTTCTCCGACGGTATGCCTTTAGGAATC 93588 Query 157531 TCTGGTACTTTTAACTATATGCTCGTCTTCCAGGCAGAGCACAATATTCTTATGCATCCG 157590 ||||| || || |||| |||| |||| ||||| || || ||||| || |||||||||||| Sbjct 93589 TCTGGCACCTTCAACTTTATGATCGTGTTCCAAGCTGAACACAACATCCTTATGCATCCG 93648 Query 157591 TTCCACATGCTCGGCGTTGCTGGGGTATTCGGTGGATCTTTGTTCTCTGCTATGCACGGA 157650 ||||||||| | || || ||||| |||||||| |||||| | ||| ||||||||| || Sbjct 93649 TTCCACATGTTGGGTGTGGCTGGCGTATTCGGCGGATCTCTATTCAGTGCTATGCATGGT 93708 Query 157651 AGTCTCGTTACTTCCTCGCTTG-TTCGTGAAACAACTGAAACAGAGTCACAGAACTATGG 157709 | || |||| || || || | || ||||| ||||| | || || ||| || Sbjct 93709 TCCTTGGTAACTT-CTAGCCTGATCCGGGAAACCACTGAGAATGAATCCGCTAACGCGGG 93767 Query 157710 TTACAAGTTCGGTCAAGAAGAAGAGACGTACAACATCGTTGCTGCACACGGTTACTTCGG 157769 ||||| ||| ||||| ||||| || || || ||||| || ||||| |||||||||||||| Sbjct 93768 TTACAGGTTTGGTCAGGAAGAGGAAACATATAACATTGTAGCTGCTCACGGTTACTTCGG 93827 Query 157770 TCGCCTGATCTTCCAATACGCTTCATTCAACAACAGCAGAAGTCTTCACTTCTTCCTCGC 157829 ||| ||||||||||||| ||| || || ||| | | || ||||| ||| | || Sbjct 93828 TCGATTGATCTTCCAATATGCTAGCTTTAATAACTCCCGTTCCCTACACTTTTTCTTGGC 93887 Query 157830 CGCATGGCCTGTTGTCGGCATCTGGTTCACTGCACTGGGCGTAAGCACCATGGCATTCAA 157889 || ||||| || || || |||||||| || || ||||| ||||||| ||||| ||||| Sbjct 93888 TGCTTGGCCAGTAGTAGGTATCTGGTTTACCGCTTTGGGCATAAGCACAATGGCTTTCAA 93947 Query 157890 CCTCAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAACAC 157949 ||| |||||||||||||| ||||| ||| | ||||| | ||||| ||||| | ||||| Sbjct 93948 CCTAAACGGTTTCAACTTTAACCAATCCGTAGTTGATAGCCAGGGACGTGTCATAAACAC 94007 Query 157950 CTGGGCAGATGTCCTGAACCGCGCTGGTCTTGGTATGGAAGTTATGCATGAGCGTAACGC 158009 ||||| || | | |||||||| ||||||||||| ||||||||||| |||||||| Sbjct 94008 ATGGGCCGACATTATCAACCGCGCCAACCTTGGTATGGAGGTTATGCATGAACGTAACGC 94067 Query 158010 ACACAACTTCCCACTGGATCTTGCT 158034 ||||||||||| || ||||| ||| Sbjct 94068 TCACAACTTCCCTCTAGATCTGGCT 94092 Score = 309 bits (342), Expect = 3e-79 Identities = 665/992 (67%), Gaps = 8/992 (1%) Strand=Plus/Plus Query 158805 GATCGTTTCGTTTTTGTTGGCTGGTCTGGACTTCTTCTTCTACCCACTGCTTATCTTGCT 158864 || ||||| | || || || ||||||| || ||||| || ||| ||| | || Sbjct 33926 GACCGTTTTGCATTCGTGGGTCGGTCTGGTCTATCGCTTCTTCCTCGTGCCTATTTCTCT 33985 Query 158865 ATTGGCGGTTGGCTTACTGGCACGACTTTCGCTACGAGCTGGTATACACATGGACTCGCT 158924 ||||||||| | || || || |||| | || |||| || || ||| | ||| Sbjct 33986 CCCGGCGGTTGGTTCACGGGTACAACTTCTGTCACCTCACGGTACACTCACGGATTGGCT 34045 Query 158925 ACTTCCTATCTTGAGGGTGCAAACTTTCTTACAGCAGCAGTTTCGACTCCAGCTGATGCT 158984 | |||||||| |||||| |||| |||||| | || | || || || || | Sbjct 34046 AGTTCCTATCCGGAGGGTCGCAACTCTCTTACCGTCGCTGCATCCACCCCCGCCAACAGC 34105 Query 158985 ATGGGTCATTCTCTTCTGCTTCTCTGGGGTCCTGAGGCTCAAGGGGATTTCGTCAGGTGG 159044 | ||||| | | | | || |||||||| ||||| ||||| |||||| | | ||| Sbjct 34106 CCAGCACATTCCCCGCCGTTGCTTTGGGGTCCCGAGGCGCAAGGAGATTTCACCCGTTGG 34165 Query 159045 GTCCAACTTGGGGGACTCTGGAATTTTGTGGCGCTCCACGGTGCCTTTGCCCTAATTGGT 159104 |||| | || || || |||| || || || ||||| ||||| |||| | || ||| Sbjct 34166 TGCCAATTAGGTGGTCTATGGACCTTCGTCGCCCTCCATGGTGCTTTTGGTTTGATGGGT 34225 Query 159105 TTCATGCTTCGCCAGTTTGAACTGGCACGTCTCATCGGT---ATC-CGTCCCTACAATGC 159160 ||| | ||||| | ||||| || || ||| || ||| ||||| || || || Sbjct 34226 CCTATGTTGCGCCAATCCGAACTCGCTCG----ATCTGTGCAATCGCGTCCGTATAACGC 34281 Query 159161 TATTGCGTTCTCTGGTCCTATTGCTGTTTTTGTCAGCGTCTTCCTTATCTACCCACTTGG 159220 || ||||| || | ||| || || |||| ||| ||| | | | ||| | || | || Sbjct 34282 AATCGCGTTTTCCGCTCCCATCGCCGTTTCTGTTCCCGTATCCTTGATCCATCCGTTGGG 34341 Query 159221 TCAGTCCAGTTGGTTTTTCGCTCCGTCCTTTGGGGTGGCCGCAATATTCAGGTTCCTACT 159280 |||||| || |||||| ||| || || || || || || || ||| | | | | || Sbjct 34342 CCAGTCCGGTCGGTTTTCCGCACCCAGCTCCGGTGTAGCAGCCATCTTCCGATCCATCCT 34401 Query 159281 CTTCCTACAAGGGTTCCACAATTGGACACTAAACCCCTTCCATATGATGGGAGTTGCTGG 159340 | ||| || || |||| |||||||| || ||||| || |||||||||||||||||||| Sbjct 34402 CCTCCCTCAGGGTCTCCATAATTGGACCCTCAACCCGTTTCATATGATGGGAGTTGCTGG 34461 Query 159341 TATCCTAGGTGGAGCACTTCTATCTGCTATTCATGGGGTCACAGTTGAAAATACATTATA 159400 | | |||| || | | | ||||| ||| || | || || || |||||| | | Sbjct 34462 AGTACCGGGTGCTGCTCCCCCACGTGCTACTCACGGCGCAACCGTGGAGAATACACTGTT 34521 Query 159401 CGAGGATGGAGAACAAGCAAACACCTTTAAGGCGTTTGATTCAACTCAAGAGGAGGAGAC 159460 ||||||||| || || || || || || | || | || ||| || ||||| Sbjct 34522 CGAGGATGGTGATGGCGCGAATACATTCCGCGCCTCCAATCCGACCCAATCTGAAGAGAC 34581 Query 159461 TTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGCATTGCGTTTTCTAA 159520 |||||| ||||| ||||| || ||||| ||||| || | | ||| |||| | || Sbjct 34582 TTATTCCATGGTTACTGCTAATCGCTTTTGGTCCCAAACATCCGGTGTTGCCCCCCCCAA 34641 Query 159521 CAAGCGGTGGCTTCATTTCTTTATGTTGTTTGTGCCTGTTATGGGTCTATGGACATCCAG 159580 ||| || || || ||| ||||| || || || || | ||| | ||| Sbjct 34642 CAAACGTCGGTCACACTTCCCCATGTTATTCGTACCCGTCACTGGTTCACGGATGAGTGC 34701 Query 159581 TATTGGCATTATTGGTCTTGCTCTCAATCTTCGTGCTTACGATTTCGTGAGTCAAGAGAT 159640 |||||| | ||||||| || | ||||| || || || || ||||| || ||| | Sbjct 34702 TATTGGAGTAGTTGGTCTAGCCCCGAATCTGCGGGCGTATGACTTCGTCTCCCAGGAGGT 34761 Query 159641 CAGAGCAGCAGAAGATCCAGAATTTGAAACGTTCTACACCAAGAACATTCTTCTGAATGA 159700 | |||||||||||||| || || ||||| ||||| ||||| ||||| |||||| Sbjct 34762 GCGCGCAGCAGAAGATCCCGAGTTCGAAACTCCTTACACAAAGAATATTCTGTCGAATGA 34821 Query 159701 AGGACTACGTGCTTGGTTGGCACCTGCTGATCAACCCCATGAAAACTTCATCTTCCCAGA 159760 || | ||||||||| ||||| || ||||| || ||||||||| || | ||||| || Sbjct 34822 GGGTATTCGTGCTTGGATGGCAGCTCAGGATCAGCCTCATGAAAACCTCGTATTCCCCGA 34881 Query 159761 AGAAGTTCTACCAAGAGGTAACGCATTGTGAT 159792 || |||||||| | || ||||| | |||| Sbjct 34882 GGAGGTTCTACCCCGTGGAAACGCTCTTTGAT 34913 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 545268433532640