Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Selaginella_20moellendorffii_20[refseq_20GCF_5F000143415.3_202010- 07-06] 758 sequences; 212,501,708 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq93 89.7 4e-12 seq27 89.7 4e-12 >seq93 Length=765235 Score = 89.7 bits (98), Expect = 4e-12 Identities = 109/146 (75%), Gaps = 2/146 (1%) Strand=Plus/Minus Query 282338 TCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGA 282397 |||| || || |||| || || || |||||||| || || || | | || | |||| Sbjct 560527 TCAAACCCGTAAGCAAGAGATGCCGCGGTTGGTTCGTTGATGATACGAAGCACGTCAAGA 560468 Query 282398 CCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGA 282457 ||||| |||||||| |||||||| ||||| ||| || ||||| || || || |||||| Sbjct 560467 CCAGCTATTCTTCCAGCATCTTTCGTGGCAGTTCTCTGGGAATCATTGAAGTAAGCAGGA 560408 Query 282458 ACAGTAATAACGGCATCTGTT-ACTT 282482 ||||| || || || | |||| |||| Sbjct 560407 ACAGTGATGACAGCCT-TGTTCACTT 560383 >seq27 Length=1973895 Score = 89.7 bits (98), Expect = 4e-12 Identities = 109/146 (75%), Gaps = 2/146 (1%) Strand=Plus/Minus Query 282338 TCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGA 282397 |||| || || |||| || || || |||||||| || || || | | || | |||| Sbjct 339117 TCAAACCCGTAAGCAAGAGATGCCGCGGTTGGTTCGTTGATGATACGAAGCACGTCAAGA 339058 Query 282398 CCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGA 282457 ||||| |||||||| |||||||| ||||| ||| || ||||| || || || |||||| Sbjct 339057 CCAGCTATTCTTCCAGCATCTTTCGTGGCAGTTCTCTGGGAATCATTGAAGTAAGCAGGA 338998 Query 282458 ACAGTAATAACGGCATCTGTT-ACTT 282482 ||||| || || || | |||| |||| Sbjct 338997 ACAGTGATGACAGCCT-TGTTCACTT 338973 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740593185403308