Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Selaginella_20moellendorffii_20[refseq_20GCF_5F000143415.3_202010- 07-06] 758 sequences; 212,501,708 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq90 87.8 4e-12 seq41 87.8 4e-12 >seq90 Length=797443 Score = 87.8 bits (96), Expect = 4e-12 Identities = 141/200 (71%), Gaps = 2/200 (1%) Strand=Plus/Plus Query 304935 TGCAGGCATCTCAAAGATCTGGCAGACCTTTAAAGGGTATTAGGCAACGCATTAAAGGTA 304994 |||||||| | ||| | ||||| ||||| | || || | |||||| | || | || Sbjct 454860 TGCAGGCAACACAACGCTCTGGTAGACCCATCAAATCCATCTGCCAACGCCTAAAGGCTA 454919 Query 304995 AAGAGGGTCGTATTCGAGGTAATCTAATGGGAAAACGTGTTGATTTTAGTGCAAGAAGTG 305054 ||||||| || ||||| || || || ||||| || |||||||||||| ||| ||| | Sbjct 454920 AAGAGGGACGGATTCGTGGGAACCTGATGGGCAAGCGTGTTGATTTTTCTGCTCGAACAG 454979 Query 305055 TAATCACACCTGATTCTCAAATTAGTCTTCATGAATTAGGAGTTCCAATTGA-AATTGCT 305113 | ||||| || ||| | | || | | || | || ||||||| || || || ||||| Sbjct 454980 TTATCACCCCGGATCCGAATATCAATATTGACGAGCTAGGAGTGCC-ATGGAGTATTGCG 455038 Query 305114 TTAAAACTAACATTTCCAGA 305133 || || | || | |||||| Sbjct 455039 TTGAACTTGACTTATCCAGA 455058 >seq41 Length=1743703 Score = 87.8 bits (96), Expect = 4e-12 Identities = 141/200 (71%), Gaps = 2/200 (1%) Strand=Plus/Plus Query 304935 TGCAGGCATCTCAAAGATCTGGCAGACCTTTAAAGGGTATTAGGCAACGCATTAAAGGTA 304994 |||||||| | ||| | ||||| ||||| | || || | |||||| | || | || Sbjct 509953 TGCAGGCAACACAACGCTCTGGTAGACCCATCAAATCCATCTGCCAACGCCTAAAGGCTA 510012 Query 304995 AAGAGGGTCGTATTCGAGGTAATCTAATGGGAAAACGTGTTGATTTTAGTGCAAGAAGTG 305054 ||||||| || ||||| || || || ||||| || |||||||||||| ||| ||| | Sbjct 510013 AAGAGGGACGGATTCGTGGGAACCTGATGGGCAAGCGTGTTGATTTTTCTGCTCGAACAG 510072 Query 305055 TAATCACACCTGATTCTCAAATTAGTCTTCATGAATTAGGAGTTCCAATTGA-AATTGCT 305113 | ||||| || ||| | | || | | || | || ||||||| || || || ||||| Sbjct 510073 TTATCACCCCGGATCCGAATATCAATATTGACGAGCTAGGAGTGCC-ATGGAGTATTGCG 510131 Query 305114 TTAAAACTAACATTTCCAGA 305133 || || | || | |||||| Sbjct 510132 TTGAACTTGACTTATCCAGA 510151 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186801273822438