Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Selaginella_20moellendorffii_20[refseq_20GCF_5F000143415.3_202010- 07-06] 758 sequences; 212,501,708 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq6 95.1 8e-15 seq2 91.5 1e-13 seq145 87.8 1e-12 seq32 86.0 4e-12 seq24 86.0 4e-12 seq317 84.2 1e-11 seq147 84.2 1e-11 >seq6 Length=4135178 Score = 95.1 bits (104), Expect = 8e-15 Identities = 155/218 (71%), Gaps = 4/218 (2%) Strand=Plus/Minus Query 33534 ACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTC 33593 ||| | |||||| || ||||| || || || ||||||||||| | || || || | Sbjct 622255 ACGAAGCACCAAGTGAAGAGTTGATTCCTTCTGGATGTTGTAATCCGCAAGGGTCCGACC 622196 Query 33594 GTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTT 33653 ||| || | || || |||||||| |||||||||||||| || | || | ||||| || Sbjct 622195 GTCCTCGAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGGTCCGGTGGGATTCCTTCCTT 622136 Query 33654 GTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGAT-TCCACGTCAACCGTG 33711 ||| || || ||||| || | ||| | |||||| | | | ||||| || | ||| Sbjct 622135 GTCCTGGATCTT-TGTTTTGACGTTGTCGATGGTGTC-CGAGCTCTCCACCTCGAGAGTG 622078 Query 33712 ATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || || || || || | ||| || || ||||||||||| Sbjct 622077 ATTGTCTTCCCAGTGAGCGTCTTGACGAAGATCTGCAT 622040 Score = 84.2 bits (92), Expect = 1e-11 Identities = 138/194 (71%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 33558 CTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAA 33617 ||| || || |||||||| || | || |||||| | || || | || ||||||||||| Sbjct 622459 CTCCTTCTGGATGTTGTAGTCCGCCAGAGTGCGTCCATCCTCGAGCTGCTTTCCGGCAAA 622400 Query 33618 AATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACAT 33677 ||||| |||||||| || | || | ||| || ||||| ||| || || | || | Sbjct 622399 GATCAAGCGCTGCTGGTCCGGGGGGATACCCTCCTTGTCCTGAATCTT-AGTCTTGACGT 622341 Query 33678 AGTC-ACGGTGTCGCTTGAT-TCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTT 33735 ||| | |||||| | | | ||||| |||| ||||| || || || || | || || Sbjct 622340 TGTCGATGGTGTC-CGAGCTCTCCACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTG 622282 Query 33736 ACAAAGATCTGCAT 33749 || ||||||||||| Sbjct 622281 ACGAAGATCTGCAT 622268 >seq2 Length=6181961 Score = 91.5 bits (100), Expect = 1e-13 Identities = 154/218 (71%), Gaps = 4/218 (2%) Strand=Plus/Minus Query 33534 ACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTC 33593 ||| | |||||| || ||||| ||| || || |||||||| || | | |||||| | Sbjct 4454673 ACGAAGCACCAAGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCCGCCAAAGTGCGTCC 4454614 Query 33594 GTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTT 33653 || |||| || || |||||||| |||||||||||||| || | || | ||| || || Sbjct 4454613 ATCCTCCAGCTGCTTGCCGGCAAAGATCAAACGCTGCTGGTCCGGTGGGATACCCTCCTT 4454554 Query 33654 GTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGAT-TCCACGTCAACCGTG 33711 ||| || || || | || | ||| | |||||| | | | ||||| |||| ||| Sbjct 4454553 GTCCTGGATCTT-AGTCTTGACGTTGTCGATGGTGTC-CGAGCTCTCCACCTCAAGGGTG 4454496 Query 33712 ATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || || || || || | || || || ||||||||||| Sbjct 4454495 ATGGTCTTGCCAGTCAGAGTCTTGACGAAGATCTGCAT 4454458 Score = 86.0 bits (94), Expect = 4e-12 Identities = 153/218 (70%), Gaps = 4/218 (2%) Strand=Plus/Minus Query 33534 ACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTC 33593 ||| | |||||| || ||||| || || || ||||||||||| | || || || | Sbjct 4454445 ACGAAGCACCAAGTGAAGAGTTGATTCCTTCTGGATGTTGTAATCCGCAAGGGTCCGACC 4454386 Query 33594 GTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTT 33653 ||| || | || || |||||||| |||||||||||||| || | || | || || || Sbjct 4454385 GTCCTCGAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGGTCCGGTGGGATCCCCTCCTT 4454326 Query 33654 GTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGAT-TCCACGTCAACCGTG 33711 ||| || || ||| | || | ||| | |||||| | | | ||||| || | ||| Sbjct 4454325 GTCCTGGATCTT-TGTCTTGACGTTGTCGATGGTGTC-CGAGCTCTCCACCTCGAGAGTG 4454268 Query 33712 ATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || || || || || | ||| || || ||||||||||| Sbjct 4454267 ATTGTCTTCCCAGTGAGCGTCTTGACGAAGATCTGCAT 4454230 >seq145 Length=315748 Score = 87.8 bits (96), Expect = 1e-12 Identities = 151/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 33546 ATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTG 33605 ||| ||||| ||| || || |||||||| || | | || | |||| || | || Sbjct 114049 ATGGAGAGTCGACTCCTTCTGGATGTTGTAGTCCGCCAAGGTCCTGCCGTCCTCTAGCTG 113990 Query 33606 TTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTT 33665 || || || || || | ||||||||| || | || | ||||||||||| ||| || Sbjct 113989 CTTACCAGCGAAGATGAGACGCTGCTGGTCCGGAGGAATCCCTTCTTTGTCCTGAATCTT 113930 Query 33666 CTGTTTCAACATAGTC-ACGGTGTCGCTTGAT-TCCACGTCAACCGTGATCGTTTTACCT 33723 | || | ||||| ||| | |||||| | | | ||||| || | |||||||| || || Sbjct 113929 C-GTCTTAACATTGTCGATGGTGTC-CGAGCTCTCCACCTCGAGGGTGATCGTCTTGCCG 113872 Query 33724 GTTAACGTTTTTACAAAGATCTGCATAGTTGGTG 33757 || | ||||| |||||||||||||| |||| || Sbjct 113871 GTGAGGGTTTTCACAAAGATCTGCATCGTTGCTG 113838 >seq32 Length=1846953 Score = 86.0 bits (94), Expect = 4e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 33541 ACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCC 33600 |||||||| || || ||| || || |||||||| |||| || || || | || || Sbjct 247715 ACCAAATGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCCAGAGTCCGGCCATCTTCT 247656 Query 33601 AATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCA 33660 | || || || ||||| |||||||||||||| || | || | |||||| ||||| Sbjct 247655 AGCTGCTTGCCCGCAAAGATCAAACGCTGCTGGTCCGGGGGGATACCTTCCTTGTCCTGG 247596 Query 33661 ATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTT 33719 || || || | || | ||| | |||||| ||||| || | ||||||||| || Sbjct 247595 ATCTT-GGTCTTCACGTTGTCAATTGTGTCGGAGCTCTCCACCTCGAGCGTGATCGTCTT 247537 Query 33720 ACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 || || || || || || ||||| |||||| Sbjct 247536 CCCCGTCAAGGTCTTGACGAAGATTTGCATA 247506 Score = 84.2 bits (92), Expect = 1e-11 Identities = 160/233 (69%), Gaps = 2/233 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||| |||| | || | ||||| ||| | || ||| ||||| ||||||||||| | Sbjct 247278 ACCTCCTCGAAGGCGCAGCACCAGATGCAAGGTCGACTCCTTTTGGATGTTGTAATCCGC 247219 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 ||| ||||| | || || | || || |||||||| ||||| |||||||| || | || Sbjct 247218 GAGCGTGCGCCCCTCCTCGAGCTGCTTGCCGGCAAAGATCAATCGCTGCTGGTCCGGAGG 247159 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | || || || || || ||| | | ||||| || | |||||| || | Sbjct 247158 AATTCCCTCCTTATCCTGGATCTTC-GACTTAACATTATCGATCGTGTCGGAGCTCTCGA 247100 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATAGTT 33753 | || | ||||||||| || || || | || || |||||||||||||| ||| Sbjct 247099 CCTCGAGCGTGATCGTCTTGCCGGTGAGAGTCTTCACAAAGATCTGCATCGTT 247047 >seq24 Length=2034879 Score = 86.0 bits (94), Expect = 4e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 33541 ACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCC 33600 |||||||| || || ||| || || |||||||| |||| || || || | || || Sbjct 499128 ACCAAATGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCCAGAGTCCGGCCATCTTCT 499069 Query 33601 AATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCA 33660 | || || || ||||| |||||||||||||| || | || | |||||| ||||| Sbjct 499068 AGCTGCTTGCCCGCAAAGATCAAACGCTGCTGGTCCGGGGGGATACCTTCCTTGTCCTGG 499009 Query 33661 ATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTT 33719 || || || | || | ||| | |||||| ||||| || | ||||||||| || Sbjct 499008 ATCTT-GGTCTTCACGTTGTCAATTGTGTCGGAGCTCTCCACCTCGAGCGTGATCGTCTT 498950 Query 33720 ACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 || || || || || || ||||| |||||| Sbjct 498949 CCCCGTCAAGGTCTTGACGAAGATTTGCATA 498919 >seq317 Length=11171 Score = 84.2 bits (92), Expect = 1e-11 Identities = 143/202 (71%), Gaps = 4/202 (2%) Strand=Plus/Minus Query 33558 CTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAA 33617 ||| || || |||||||| || | | || | |||| || | || || || ||||| Sbjct 9787 CTCCTTCTGGATGTTGTAGTCCGCCAAGGTCCTGCCGTCCTCTAGCTGCTTACCTGCAAA 9728 Query 33618 AATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACAT 33677 || | ||||||||| || | || | ||||| ||||| ||| ||| || | ||||| Sbjct 9727 GATGAGACGCTGCTGGTCCGGAGGAATCCCTTCCTTGTCCTGAATCTTC-GTCTTAACAT 9669 Query 33678 AGTC-ACGGTGTCGCTTGAT-TCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTT 33735 ||| | |||||| | | | ||||| || | |||||||| || || || | ||||| Sbjct 9668 TGTCGATGGTGTC-CGAGCTCTCCACCTCGAGAGTGATCGTCTTGCCAGTCAGGGTTTTC 9610 Query 33736 ACAAAGATCTGCATAGTTGGTG 33757 |||||||||||||| |||| || Sbjct 9609 ACAAAGATCTGCATCGTTGCTG 9588 >seq147 Length=303747 Score = 84.2 bits (92), Expect = 1e-11 Identities = 143/202 (71%), Gaps = 4/202 (2%) Strand=Plus/Minus Query 33558 CTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAA 33617 ||| || || |||||||| || | | || | |||| || | || || || ||||| Sbjct 247203 CTCCTTCTGGATGTTGTAGTCCGCCAAGGTCCTGCCGTCCTCTAGCTGCTTACCTGCAAA 247144 Query 33618 AATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACAT 33677 || | ||||||||| || | || | ||||| ||||| ||| ||| || | ||||| Sbjct 247143 GATGAGACGCTGCTGGTCCGGAGGAATCCCTTCCTTGTCCTGAATCTTC-GTCTTAACAT 247085 Query 33678 AGTC-ACGGTGTCGCTTGAT-TCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTT 33735 ||| | |||||| | | | ||||| || | |||||||| || || || | ||||| Sbjct 247084 TGTCGATGGTGTC-CGAGCTCTCCACCTCGAGAGTGATCGTCTTGCCAGTCAGGGTTTTC 247026 Query 33736 ACAAAGATCTGCATAGTTGGTG 33757 |||||||||||||| |||| || Sbjct 247025 ACAAAGATCTGCATCGTTGCTG 247004 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328700963391360