Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Selaginella_20moellendorffii_20[refseq_20GCF_5F000143415.3_202010- 07-06] 758 sequences; 212,501,708 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq145 154 3e-32 seq44 145 2e-29 seq317 120 7e-22 seq125 120 7e-22 seq6 120 7e-22 seq147 116 9e-21 >seq145 Length=315748 Score = 154 bits (170), Expect = 3e-32 Identities = 165/218 (76%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||| || |||||||| || ||||||||| |||| ||||| || || ||| Sbjct 114533 CAGATCTTTGTCAAGACACTCACAGGGAAGACGATCACTCTGGAGGTGGAGAGCTCAGAC 114592 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| || ||| ||||| || || || || || ||| |||||| || Sbjct 114593 ACCATCGACAACGTGAAGACTAAGATCCAGGACAAGGAGGGGATTCCACCGGACCAGCAG 114652 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 |||||||||||||||| |||||| | || ||||| ||||| || ||||| |||||| || Sbjct 114653 CGACTTATCTTCGCCGGGAAGCAGCTCGAGGATGGCAGGACATTAGCCGACTACAACATC 114712 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 ||||| || || || ||||| ||||||||| | || || Sbjct 114713 CAGAAGGAATCGACGCTTCATCTTGTTTTGCGGCTCCG 114750 Score = 114 bits (126), Expect = 3e-20 Identities = 149/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| || | ||||| || ||||||||| |||| ||||| || || ||| Sbjct 114761 CAGATCTTCGTCAAGACCTTGACAGGCAAGACGATCACTCTGGAGGTGGAGAGCTCGGAC 114820 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| || ||| ||||| || || || ||||| ||| |||||| || Sbjct 114821 ACGATCGACAATGTCAAGACCAAGATCCAGGACAAGGAAGGCATTCCTCCGGACCAGCAG 114880 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || ||||| ||||| |||||| | || ||||| | ||| |||| ||||| ||| || Sbjct 114881 CGTCTCATCTTTGCCGGGAAGCAGCTCGAGGATGGGCGTACTCTGGCAGATTATAACATC 114940 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||||||||| || || || || || Sbjct 114941 CAGAAAGAGTCGACCCTCCATCTCGT 114966 Score = 93.3 bits (102), Expect = 1e-13 Identities = 83/104 (80%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811 || || | ||||||||| ||||| || || || ||||||| || ||||| || || ||| Sbjct 114750 CGGAGCCGCAAAACAAGATGAAGCGTCGATTCCTTCTGGATGTTGTAGTCGGCTAATGTC 114691 Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTG 204855 || ||||| || |||||||| |||||||||||||| || || || Sbjct 114690 CTGCCATCCTCGAGCTGCTTCCCGGCGAAGATAAGTCGCTGCTG 114647 >seq44 Length=1658729 Score = 145 bits (160), Expect = 2e-29 Identities = 163/218 (75%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||| || |||||||| || ||||||||| |||| ||||| || || ||| Sbjct 1443844 CAGATCTTTGTCAAGACACTCACAGGGAAGACGATCACTCTGGAGGTGGAGAGCTCGGAC 1443785 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || || ||| ||||| || || || || || ||| |||||| || Sbjct 1443784 ACTATTGACAACGTGAAGACTAAGATCCAGGACAAGGAGGGGATTCCACCGGACCAGCAG 1443725 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 |||||||||||||||| |||||| | || ||||| |||| || ||||| |||||| || Sbjct 1443724 CGACTTATCTTCGCCGGGAAGCAGCTCGAGGATGGCCGGACATTAGCCGACTACAACATC 1443665 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 ||||| || || || ||||| ||||||||| | || || Sbjct 1443664 CAGAAGGAATCGACGCTTCATCTTGTTTTGCGGCTCCG 1443627 Score = 109 bits (120), Expect = 1e-18 Identities = 135/185 (73%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAA 206253 ||||| || ||||||||| |||| ||||| || || ||||| |||| || ||| Sbjct 1443595 ACAGGCAAGACGATCACTCTGGAGGTGGAGAGCTCGGACACGATCGACAATGTCAAGACC 1443536 Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 ||||| || || || ||||| ||| |||||| || | || || || ||||| ||| Sbjct 1443535 AAGATCCAGGACAAGGAAGGCATTCCTCCGGACCAGCAGCGTCTCATATTTGCCGGGAAG 1443476 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 ||| | || ||||| | ||| |||| ||||| ||| ||||||||||||| || || || Sbjct 1443475 CAGCTCGAGGATGGGCGTACTCTGGCAGATTATAACATCCAGAAAGAGTCGACCCTCCAT 1443416 Query 206374 CTTGT 206378 || || Sbjct 1443415 CTCGT 1443411 Score = 89.7 bits (98), Expect = 1e-12 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811 || || | ||||||||| ||||| || || || ||||||| || ||||| || || ||| Sbjct 1443627 CGGAGCCGCAAAACAAGATGAAGCGTCGATTCCTTCTGGATGTTGTAGTCGGCTAATGTC 1443686 Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTG 204855 | ||||| || |||||||| |||||||||||||| || || || Sbjct 1443687 CGGCCATCCTCGAGCTGCTTCCCGGCGAAGATAAGTCGCTGCTG 1443730 >seq317 Length=11171 Score = 120 bits (132), Expect = 7e-22 Identities = 143/194 (74%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || || || || || |||||| |||| ||||| || || ||||| | || Sbjct 1828 AAGACCCTGACCGGCAAGACCATCACTCTGGAGGTGGAGAGCTCGGACACTATTGACAAC 1887 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| || || || ||||||||| |||||| || ||||||||||| Sbjct 1888 GTCAAGACGAAGATCCAGGACAAGGAAGGAATTCCTCCGGACCAGCAGCGACTTATCTTC 1947 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || |||||| | || |||||| | || ||||| || || ||| ||||||| ||||| Sbjct 1948 GCTGGGAAGCAGCTCGAGGATGGACGCACCTTGGCGGACTATAACATCCAGAAGGAGTCG 2007 Query 206365 ACTCTTCACCTTGT 206378 || || |||||||| Sbjct 2008 ACCCTCCACCTTGT 2021 Score = 116 bits (128), Expect = 9e-21 Identities = 142/194 (73%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || || || || || ||||| |||| ||||| || || ||||| | || Sbjct 2284 AAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGAGCTCGGACACGATTGACAAC 2343 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| || || |||||||||||| |||||| || | || |||||| Sbjct 2344 GTGAAGACCAAGATCCAGGACAAAGAAGGAATTCCCCCGGACCAGCAGCGCCTCATCTTC 2403 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 |||||||||||| | || || || |||||| | ||||| |||||| ||||||| ||||| Sbjct 2404 GCCGGAAAGCAGCTTGAGGACGGCAGGACTCTAGCCGACTACAACATCCAGAAGGAGTCG 2463 Query 206365 ACTCTTCACCTTGT 206378 || || || || || Sbjct 2464 ACCCTCCATCTCGT 2477 Score = 116 bits (128), Expect = 9e-21 Identities = 142/194 (73%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || || || || ||||||||| | || ||||| || || ||||| |||| Sbjct 9839 AAGACCCTGACCGGCAAGACGATCACTCTCGAGGTGGAGAGCTCGGACACCATCGACAAT 9898 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| || || || || |||||| |||||| || ||||||||||| Sbjct 9899 GTTAAGACGAAGATCCAGGACAAGGAGGGAATTCCCCCGGACCAGCAGCGACTTATCTTC 9958 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || |||||| | || ||||| ||||| |||| || |||||| ||||||| ||||| Sbjct 9959 GCTGGGAAGCAGCTCGAGGATGGGCGGACTCTGGCGGACTACAACATCCAGAAGGAGTCG 10018 Query 206365 ACTCTTCACCTTGT 206378 || || || || || Sbjct 10019 ACCCTCCATCTCGT 10032 Score = 109 bits (120), Expect = 1e-18 Identities = 155/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||| || || ||||| || || |||||| |||| ||||| || || || Sbjct 2044 CAGATCTTTGTCAAGACACTTACAGGGAAGACCATCACTCTGGAGGTGGAGAGCTCGGAT 2103 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || || ||| ||||| || || || || |||||| |||||| || Sbjct 2104 ACGATTGACAACGTCAAGACTAAGATCCAGGACAAGGAGGGAATTCCCCCGGACCAGCAG 2163 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || ||||||||||| |||||| | || ||||| | || |||| || |||||| || Sbjct 2164 CGTCTCATCTTCGCCGGGAAGCAGCTTGAGGATGGGCGTACGCTGGCGGACTACAACATC 2223 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 ||||| || || || || ||||| || || | ||||| Sbjct 2224 CAGAAGGAATCGACCCTCCACCTCGTCCTGCGGCTTCG 2261 Score = 89.7 bits (98), Expect = 1e-12 Identities = 75/92 (82%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 204764 ACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCATCTTCC 204823 |||||||| || || ||||| ||||||| |||||||| ||||| || | |||||| || Sbjct 2021 ACAAGGTGGAGGGTCGACTCCTTCTGGATGTTATAGTCCGCCAAGGTGCGTCCATCCTCG 1962 Query 204824 AGCTGCTTTCCGGCGAAGATAAGCCGTTGTTG 204855 |||||||| || ||||||||||| || || || Sbjct 1961 AGCTGCTTCCCAGCGAAGATAAGTCGCTGCTG 1930 >seq125 Length=444406 Score = 120 bits (132), Expect = 7e-22 Identities = 150/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||||| || || || || ||||||||| | || ||||| || || ||| Sbjct 270832 CAGATCTTTGTGAAAACCCTGACTGGCAAGACGATCACTCTCGAGGTGGAGAGCTCGGAC 270891 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| || ||| ||||| || || || || |||||| |||||| || Sbjct 270892 ACCATCGACAATGTTAAGACGAAGATCCAGGACAAGGAGGGAATTCCCCCGGACCAGCAG 270951 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 ||||||||||||| || |||||| | || ||||| | || |||| || |||||| || Sbjct 270952 CGACTTATCTTCGCTGGGAAGCAGCTTGAGGATGGGCGTACGCTGGCGGACTACAACATC 271011 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||| |||||||| || || || || Sbjct 271012 CAGAAGGAGTCTACCCTCCATCTCGT 271037 Score = 114 bits (126), Expect = 3e-20 Identities = 149/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| || || || || || || ||||| |||| ||||| || || ||| Sbjct 271288 CAGATCTTCGTCAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGAGCTCGGAC 271347 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || || ||| ||||| || || || ||||||||| |||||| || Sbjct 271348 ACGATTGACAACGTGAAGACCAAGATCCAGGACAAGGAAGGAATTCCCCCGGACCAGCAG 271407 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || |||||||||||||||||| | || || || |||||| | ||||| |||||| || Sbjct 271408 CGCCTCATCTTCGCCGGAAAGCAGCTTGAGGACGGCAGGACTCTAGCCGACTACAACATC 271467 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||| ||||| || || || || || Sbjct 271468 CAGAAGGAGTCGACCCTCCATCTCGT 271493 >seq6 Length=4135178 Score = 120 bits (132), Expect = 7e-22 Identities = 150/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||| || || || || || || ||||| | || ||||| || || ||| Sbjct 622955 CAGATCTTTGTCAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTGGAGAGCTCGGAC 623014 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| || ||| ||||| || || || |||||||| |||||| || Sbjct 623015 ACCATCGACAACGTCAAGACCAAGATCCAGGACAAGGAAGGAATCCCTCCGGACCAGCAG 623074 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 || || ||||| ||||| |||||| | || |||||| | ||| | |||||||||||| || Sbjct 623075 AGGCTGATCTTTGCCGGCAAGCAGCTCGAGGATGGACGAACTCTAGCCGATTACAACATC 623134 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||| ||||| || || ||||| || Sbjct 623135 CAGAAGGAGTCGACGCTCCACCTGGT 623160 Score = 109 bits (120), Expect = 1e-18 Identities = 155/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| || || || || || || ||||| | || ||||| || || ||| Sbjct 622271 CAGATCTTCGTCAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTGGAGAGCTCGGAC 622330 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| || ||| |||||||| || || || || || |||||| || Sbjct 622331 ACCATCGACAACGTCAAGACTAAGATTCAGGACAAGGAGGGTATCCCCCCGGACCAGCAG 622390 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | | ||||| |||||||||||| | || |||||| | ||| |||| || |||||| || Sbjct 622391 CGCTTGATCTTTGCCGGAAAGCAGCTCGAGGATGGACGCACTCTGGCGGACTACAACATC 622450 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 ||||| ||||| || || ||||| ||| | || ||||| Sbjct 622451 CAGAAGGAGTCGACGCTCCACCTGGTTCTCAGGCTTCG 622488 Score = 86.0 bits (94), Expect = 1e-11 Identities = 78/97 (80%), Gaps = 1/97 (1%) Strand=Plus/Minus Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811 ||||| || | ||| ||||| || || ||||| ||||||| || ||||| |||| ||| Sbjct 622488 CGAAGCCTGAGAACCAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCCGCCAGAGTG 622429 Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGAT-AAGC 204847 | |||||| || |||||||||||||| ||||| |||| Sbjct 622428 CGTCCATCCTCGAGCTGCTTTCCGGCAAAGATCAAGC 622392 >seq147 Length=303747 Score = 116 bits (128), Expect = 9e-21 Identities = 142/194 (73%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || || || || ||||||||| | || ||||| || || ||||| |||| Sbjct 247255 AAGACCCTGACCGGCAAGACGATCACTCTCGAGGTGGAGAGCTCGGACACCATCGACAAT 247314 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| || || || || |||||| |||||| || ||||||||||| Sbjct 247315 GTTAAGACGAAGATCCAGGACAAGGAGGGAATTCCCCCGGACCAGCAGCGACTTATCTTC 247374 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || |||||| | || ||||| ||||| |||| || |||||| ||||||| ||||| Sbjct 247375 GCTGGGAAGCAGCTCGAGGATGGGCGGACTCTGGCGGACTACAACATCCAGAAGGAGTCG 247434 Query 206365 ACTCTTCACCTTGT 206378 || || || || || Sbjct 247435 ACCCTCCATCTCGT 247448 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181809322304118