Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Selaginella_20moellendorffii_20[refseq_20GCF_5F000143415.3_202010- 07-06] 758 sequences; 212,501,708 total letters Query= NC_025461.1 Length=45871 Score E Sequences producing significant alignments: (Bits) Value seq758 569 6e-158 >seq758 Length=186484 Score = 569 bits (630), Expect = 6e-158 Identities = 713/968 (74%), Gaps = 10/968 (1%) Strand=Plus/Plus Query 28654 ACCAACAACCGTCTTTATGTTGGGTGGTTTGGAACACTGATGATTCCGTGTCTCCTTGCA 28713 ||| | || || ||||| |||||||||| || ||||||||| ||| || | | Sbjct 93130 ACCGAAAATCGCCTTTACATTGGGTGGTTCGGTGTACTGATGATCCCGACCCTGTTAACT 93189 Query 28714 GCCACCATCTGCTTCATTATTGCATTCATTGCGGCACCACCAGTTGACATTGATGGCATC 28773 || ||| | ||||||| ||| || || || || || ||||| || ||||| || || Sbjct 93190 GCAACCTCCGTATTCATTACTGCTTTTATCGCAGCTCCGCCAGTAGATATTGACGGTATT 93249 Query 28774 CGCGAACCTGTCGCTGGAAGTCTTCTCTATGGAAACAACATCATATCGGGAGCCGTCGTA 28833 ||||| || || |||| |||| | || || ||||| || || || || || | | Sbjct 93250 CGCGAGCCCGTTTCTGGTTCTCTTATATACGGGAACAATATAATCTCTGGTGCTATTATC 93309 Query 28834 CCGAGCAGCAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTAATTCACTTGAT 28893 || | | | || ||||| | ||||||||||| ||||||||||| || ||||| Sbjct 93310 CCCACCTCCGCCGCTATCGGTTTGCACTTCTACCCCATTTGGGAAGCGGCATCTATTGAT 93369 Query 28894 GAATGGCTCTACAACGGGGGACCGTTCCAACTTGTGGTCTTCCACTTCCTCATTGGCGT- 28952 |||||||| |||||||| || || | | |||| | || | |||||||| |||| || Sbjct 93370 GAATGGCTATACAACGGCGGTCCCTACGAACTAATCGTTCTTCACTTCCTGCTTGGAGTA 93429 Query 28953 -CTATGCTTACATGGGACGCGAGTGGGAACTTAGCTATCGACTAGGAATGAGGCCGTGGA 29011 || ||| |||||||| || |||||||||||||||| || | || ||| | || |||| Sbjct 93430 GCT-TGC-TACATGGGTCGTGAGTGGGAACTTAGCTTCCGCTTGGGTATGCGCCCTTGGA 93487 Query 29012 TTTGTGTCGCATACTCAGCTCCCGTCGCAGCGGCATCTGCGGTTTTCCTCGTCTACCCAT 29071 | ||| || |||||||| || || ||||| || | || ||||| | ||||||| Sbjct 93488 TCGCTGTTGCGTACTCAGCCCCTGTTGCAGCCGCCACCGCCGTTTTTTTGATCTACCCTA 93547 Query 29072 TCGGTCAAGGTTCTTTTAGCGACGCGATGCCTTTGGGTATTTCAGGCACCTTCAACTACA 29131 | |||||||| || ||||| |||||||| || || || ||||||||||||| | Sbjct 93548 TTGGTCAAGGAAGCTTCTCCGACGGTATGCCTTTAGGAATCTCTGGCACCTTCAACTTTA 93607 Query 29132 TGCTGGTGTTCCAAGCCGAACATAACATTCTCATGCACCCGTTCCACATGCTGGGCGTTG 29191 || | ||||||||||| ||||| ||||| || ||||| |||||||||||| |||| || | Sbjct 93608 TGATCGTGTTCCAAGCTGAACACAACATCCTTATGCATCCGTTCCACATGTTGGGTGTGG 93667 Query 29192 CTGGAGTGTTCGGTGGCTCGCTATTTAGTGCAATGCACGGTTCGCTTGTCACGTCCTCGC 29251 |||| || ||||| || || ||||| ||||| ||||| ||||| |||| | | || || Sbjct 93668 CTGGCGTATTCGGCGGATCTCTATTCAGTGCTATGCATGGTTC-CTTGGTAACTTCTAGC 93726 Query 29252 TTG-TGCGTGAGACGACTGAAGACATCTCTCAG--AACTATGGTTACAAGTTTGGACAAG 29308 || | || || || |||| ||| || || | ||| ||||||| |||||| || | Sbjct 93727 CTGATCCGGGAAACCACTG-AGA-ATGAATCCGCTAACGCGGGTTACAGGTTTGGTCAGG 93784 Query 29309 AAGAAGAGACTTATAACATCGTAGCCGCTCACGGTTACTTTGGACGTTTGATCTTCCAAT 29368 |||| || || |||||||| ||||| |||||||||||||| || || ||||||||||||| Sbjct 93785 AAGAGGAAACATATAACATTGTAGCTGCTCACGGTTACTTCGGTCGATTGATCTTCCAAT 93844 Query 29369 ATGCTTCTTTCAATAATAGCCGTTCTCTACACTTCTTCCTTGCTGCCTGGCCGGTGGTAG 29428 ||||| || ||||| |||||| |||||||| ||| | ||||| ||||| || |||| Sbjct 93845 ATGCTAGCTTTAATAACTCCCGTTCCCTACACTTTTTCTTGGCTGCTTGGCCAGTAGTAG 93904 Query 29429 GGATTTGGTTCGCTGCCTTGGGCGTTTCTACAATGGCGTTTAATCTGAACGGTTTTAACT 29488 | || ||||| | || |||||| | |||||||| || || || |||||||| |||| Sbjct 93905 GTATCTGGTTTACCGCTTTGGGCATAAGCACAATGGCTTTCAACCTAAACGGTTTCAACT 93964 Query 29489 TTAACCAGTCGCTTCTCGACAACAATGGTCGTGTCATTAATACTTGGGCTGATGTTCTCA 29548 ||||||| || | | || | | | || |||||||| || || ||||| || || ||| Sbjct 93965 TTAACCAATCCGTAGTTGATAGCCAGGGACGTGTCATAAACACATGGGCCGACATTATCA 94024 Query 29549 ATCGCGCTAACCTCGGCTTTGAAGTAATGCATGAGCGTAATGCTCATAACTTCCCACTTG 29608 | ||||| ||||| || | || || |||||||| ||||| ||||| |||||||| || | Sbjct 94025 ACCGCGCCAACCTTGGTATGGAGGTTATGCATGAACGTAACGCTCACAACTTCCCTCTAG 94084 Query 29609 ATCTGGCT 29616 |||||||| Sbjct 94085 ATCTGGCT 94092 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146664279826268