Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Selaginella_20moellendorffii_20[refseq_20GCF_5F000143415.3_202010- 07-06] 758 sequences; 212,501,708 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq317 96.9 3e-15 seq125 96.9 3e-15 seq32 87.8 2e-12 seq59 86.0 6e-12 seq24 84.2 2e-11 seq147 82.4 7e-11 >seq317 Length=11171 Score = 96.9 bits (106), Expect = 3e-15 Identities = 157/226 (69%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||||| || | || | ||| | | | ||||| || || ||||| || || || ||| Sbjct 2718 ACGCAGACGAAGGACGAGATGGAGGGTGGACTCCTTCTGGATGTTATAATCCGCCAGGGT 2659 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 |||| ||| |||||||| || |||| | |||| |||||||| || || ||||| ||||| Sbjct 2658 ACGCCCATCCTCGAGCTGCTTCCCGGCAAAGATGAGACGCTGCTGGTCCGGAGGAATGCC 2599 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 ||||||||| || || |||| | || | || || | |||||| || | Sbjct 2598 TTCTTTATCCTGGATCTTGGTCTTCACATTGTCGATGGTGTCCGAGCTCTCCACCTCCAG 2539 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATGACT 132127 || | || || || || ||||| || | ||||||||||||| || Sbjct 2538 GGTGATGGTCTTGCCGGTGAGAGTCTTGACGAAAATCTGCATGCCT 2493 Score = 82.4 bits (90), Expect = 7e-11 Identities = 153/222 (69%), Gaps = 2/222 (1%) Strand=Plus/Minus Query 131903 CGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTA 131962 |||| |||| || | ||| | | | ||||| || || ||||||||||| || ||| Sbjct 1805 CGCAGCCGCAGGACGAGATGGAGGGTAGACTCCTTCTGGATGTTGTAGTCCGCCAAGGTC 1746 Query 131963 CGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCT 132022 | || || ||||| ||||| | | |||| |||||||| || || ||||| || ||| Sbjct 1745 CTGCCGTCCTCTAGCTGCTTACCTGCAAAGATGAGACGCTGCTGGTCCGGAGGAATCCCT 1686 Query 132023 TCTTTATCGGTAATTTTTTGTTTCAAC-TGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 || || || | | | || || | ||| | || | || || | |||||| |||| Sbjct 1685 TCCTTGTC-CTGAATCTTCGTCTTAACGTTGTCAATGGTGTCCGAGCTCTCCACCTCGAG 1627 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || | ||| || |||||||| ||||| | || |||||||| Sbjct 1626 AGTGATCGTCTTGCCAGTCAGGGTTTTCACAAAGATCTGCAT 1585 Score = 82.4 bits (90), Expect = 7e-11 Identities = 153/222 (69%), Gaps = 2/222 (1%) Strand=Plus/Minus Query 131903 CGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTA 131962 |||| |||| || | ||| | | | ||||| || || ||||||||||| || ||| Sbjct 9816 CGCAGCCGCAGGACGAGATGGAGGGTAGACTCCTTCTGGATGTTGTAGTCCGCCAAGGTC 9757 Query 131963 CGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCT 132022 | || || ||||| ||||| | | |||| |||||||| || || ||||| || ||| Sbjct 9756 CTGCCGTCCTCTAGCTGCTTACCTGCAAAGATGAGACGCTGCTGGTCCGGAGGAATCCCT 9697 Query 132023 TCTTTATCGGTAATTTTTTGTTTCAAC-TGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 || || || | | | || || | ||| | || | || || | |||||| |||| Sbjct 9696 TCCTTGTC-CTGAATCTTCGTCTTAACATTGTCGATGGTGTCCGAGCTCTCCACCTCGAG 9638 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || | ||| || |||||||| ||||| | || |||||||| Sbjct 9637 AGTGATCGTCTTGCCAGTCAGGGTTTTCACAAAGATCTGCAT 9596 >seq125 Length=444406 Score = 96.9 bits (106), Expect = 3e-15 Identities = 157/226 (69%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||||| || | || | ||| | | | ||||| || || ||||| || || || ||| Sbjct 271734 ACGCAGACGAAGGACGAGATGGAGGGTCGACTCCTTCTGGATGTTATAATCCGCCAGGGT 271675 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 |||| ||| |||||||| || |||| | |||| |||||||| || || ||||| ||||| Sbjct 271674 ACGCCCATCCTCGAGCTGCTTCCCGGCAAAGATGAGACGCTGCTGGTCCGGAGGAATGCC 271615 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 ||||||||| || || |||| | || | || || | |||||| || | Sbjct 271614 TTCTTTATCCTGGATCTTGGTCTTCACATTGTCGATGGTGTCCGAGCTCTCCACCTCCAG 271555 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATGACT 132127 || | || || || || ||||| || | ||||||||||||| || Sbjct 271554 GGTAATGGTCTTGCCGGTGAGAGTCTTGACGAAAATCTGCATGCCT 271509 >seq32 Length=1846953 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCG 131974 |||||||| | | || || ||||| |||||||||||| || || || |||||| Sbjct 247487 ACCAAATGGAGCGTGGATTCCTTTTGGATGTTGTAGTCGGCCAGAGTCCGGCCATCTTCT 247428 Query 131975 AGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTA 132034 ||||| || |||| | |||| | ||||| || || ||||| |||||||| || || | Sbjct 247427 AGCTGCTTGCCGGCAAAGATCAATCGCTGCTGGTCCGGAGGGATGCCTTCCTTGTC-CTG 247369 Query 132035 ATTTTTTGTTTCAAC-TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTT 132093 | || || | ||| | || | || |||| |||||| |||| ||| | ||| || Sbjct 247368 GATCTTGGTCTTAACGTTGTCGATCGTGTCGGAGCTCTCCACCTCGAGCGTAATCGTCTT 247309 Query 132094 ACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || || || || || | |||||| ||||| Sbjct 247308 CCCCGTTAGGGTCTTGACGAAAATTTGCAT 247279 >seq59 Length=1263218 Score = 86.0 bits (94), Expect = 6e-12 Identities = 152/222 (68%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||| | ||| | |||||||| | | ||||| || || |||||||||||| || || Sbjct 502897 ACGAAGGCGAAGGACCAAATGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCCAGAGT 502956 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 || |||||| ||||| || || | | |||| | |||||| || || ||||| ||||| Sbjct 502957 CCGGCCATCTTCTAGCTGCTTGCCCGCAAAGATCAAACGCTGCTGGTCCGGAGGAATGCC 503016 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 ||| || || || || |||| | || | || |||| |||||| |||| Sbjct 503017 TTCCTTGTCCTGGATCTTGGTCTTCACGTTGTCAATTGTGTCGGAGCTCTCCACCTCGAG 503076 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||| | ||| || || |||| || || | ||| || ||||| Sbjct 503077 CGTGATCGTCTTCCCCGTCAAGGTCTTGACGAAGATTTGCAT 503118 >seq24 Length=2034879 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCG 131974 |||||||| | | || || ||||| |||||||||||| | || || |||||| Sbjct 498672 ACCAAATGGAGCGTGGATTCCTTTTGGATGTTGTAGTCGGCAAGAGTCCGGCCATCTTCT 498613 Query 131975 AGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTA 132034 ||||| || |||| | |||| | ||||| || || ||||| |||||||| || || | Sbjct 498612 AGCTGCTTGCCGGCAAAGATCAATCGCTGCTGGTCCGGAGGGATGCCTTCCTTGTC-CTG 498554 Query 132035 ATTTTTTGTTTCAAC-TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTT 132093 | || || | ||| | || | || |||| |||||| |||| ||| | ||| || Sbjct 498553 GATCTTGGTCTTAACGTTGTCGATCGTGTCGGAGCTCTCCACCTCGAGCGTAATCGTCTT 498494 Query 132094 ACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || || || || || | |||||| ||||| Sbjct 498493 CCCCGTTAGGGTCTTGACGAAAATTTGCAT 498464 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCG 131974 |||||||| | | || || ||||| |||||||||||| || || || |||||| Sbjct 498900 ACCAAATGGAGCGTGGATTCCTTTTGGATGTTGTAGTCGGCCAGAGTCCGGCCATCTTCC 498841 Query 131975 AGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTA 132034 ||||| || |||| | |||| | ||||| || || ||||| |||||||| || || | Sbjct 498840 AGCTGCTTGCCGGCAAAGATCAATCGCTGCTGGTCCGGAGGGATGCCTTCCTTGTC-CTG 498782 Query 132035 ATTTTTTGTTTCAAC-TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTT 132093 | || || | ||| | || | || |||| |||||| |||| ||| | ||| || Sbjct 498781 GATCTTCGTCTTAACGTTGTCAATTGTGTCGGAGCTCTCCACCTCGAGCGTGATCGTCTT 498722 Query 132094 ACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || |||| || || | ||| || ||||| Sbjct 498721 CCCCGTCAAGGTCTTGACGAAGATTTGCAT 498692 >seq147 Length=303747 Score = 82.4 bits (90), Expect = 7e-11 Identities = 153/222 (69%), Gaps = 2/222 (1%) Strand=Plus/Minus Query 131903 CGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTA 131962 |||| |||| || | ||| | | | ||||| || || ||||||||||| || ||| Sbjct 247232 CGCAGCCGCAGGACGAGATGGAGGGTAGACTCCTTCTGGATGTTGTAGTCCGCCAAGGTC 247173 Query 131963 CGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCT 132022 | || || ||||| ||||| | | |||| |||||||| || || ||||| || ||| Sbjct 247172 CTGCCGTCCTCTAGCTGCTTACCTGCAAAGATGAGACGCTGCTGGTCCGGAGGAATCCCT 247113 Query 132023 TCTTTATCGGTAATTTTTTGTTTCAAC-TGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 || || || | | | || || | ||| | || | || || | |||||| |||| Sbjct 247112 TCCTTGTC-CTGAATCTTCGTCTTAACATTGTCGATGGTGTCCGAGCTCTCCACCTCGAG 247054 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || | ||| || |||||||| ||||| | || |||||||| Sbjct 247053 AGTGATCGTCTTGCCAGTCAGGGTTTTCACAAAGATCTGCAT 247012 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476606684108880