Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Selaginella_20moellendorffii_20[refseq_20GCF_5F000143415.3_202010- 07-06] 758 sequences; 212,501,708 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq1 113 6e-19 seq21 111 2e-18 seq9 107 3e-17 seq91 98.7 1e-14 seq74 98.7 1e-14 seq87 93.3 6e-13 seq41 89.7 7e-12 seq90 86.0 9e-11 seq6 86.0 9e-11 seq2 86.0 9e-11 >seq1 Length=6951972 Score = 113 bits (124), Expect = 6e-19 Identities = 165/228 (72%), Gaps = 8/228 (4%) Strand=Plus/Plus Query 724916 CAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATGTC 724975 |||||||||||||||||| |||| | ||||| ||| || | |||| ||||| Sbjct 3079457 CAAGGTGCTCAAGCAGGTCCACCAGGAGA---TTGGG--ATC-TCGAGCAAGGCCATGGG 3079510 Query 724976 GATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCG-GCACCGAGGCCGGTCGCC 725034 |||||||||| || |||| || || | || ||| ||| ||||| | || | Sbjct 3079511 GATCATGAACAGCTTCATCAATGATATCTTTGAGAAGCTCGCGCAG-GAGGCGGCGCGGC 3079569 Query 725035 TGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGCC 725094 ||||||||| ||||||| ||| ||| ||||||||||||||||||||||| | | Sbjct 3079570 TGGCGCGCTACAACAAGAAGCCCACCATCACGTCGCGCGAGATCCAGACCGCCGTGAGGC 3079629 Query 725095 TGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 | ||| | | |||||| || |||| ||||||||| |||||| |||| Sbjct 3079630 TCATCCTCCCCGGCGAGCTCGCCAAGCACGCCGTGAGCGAGGGGACCA 3079677 >seq21 Length=2305360 Score = 111 bits (122), Expect = 2e-18 Identities = 170/235 (72%), Gaps = 12/235 (5%) Strand=Plus/Plus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||| |||||||||||||||||| || ||| || || ||| || ||||| | || Sbjct 758333 ATCTTCAAGGTGCTCAAGCAGGTCCATCCC-GACACG--GGGATCTCGTCCAA---GGCC 758386 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCG-GCACCGAGGCCGG 725029 ||| ||||||| |||| || |||||||||| | || ||| ||| ||||| | Sbjct 758387 ATGGGGATCATGGACTCTTTCATCAACGACATCTTTGAGAAGCTCGCGCAG-GAGGC--G 758443 Query 725030 TCGC--CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCC 725087 |||| ||||||| || ||||||| ||| || | | |||||||||||||||| Sbjct 758444 TCGCGGCTGGCGCTCTACAACAAGAAGCCCACCGTCACCTCTCGCGAGATCCAGACCGGG 758503 Query 725088 GTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||| | |||| | | || || || |||| |||||||||||||||||| |||| Sbjct 758504 GTGAGGTTGATTCTCCCGGGAGAGCTCGCCAAGCACGCCGTCTCCGAGGGGACCA 758558 >seq9 Length=3666672 Score = 107 bits (118), Expect = 3e-17 Identities = 164/228 (72%), Gaps = 8/228 (4%) Strand=Plus/Minus Query 724916 CAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATGTC 724975 |||||||||||||||||| |||| | ||||| ||| || | |||| ||||| Sbjct 2465162 CAAGGTGCTCAAGCAGGTCCACCAGGAGA---TTGGG--ATC-TCGAGCAAGGCCATGGG 2465109 Query 724976 GATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCG-GCACCGAGGCCGGTCGCC 725034 |||||||||| || |||| || || | || ||| ||| ||||| | || | Sbjct 2465108 GATCATGAACAGCTTCATCAATGATATCTTTGAGAAGCTCGCGCAG-GAGGCGGCGCGGC 2465050 Query 725035 TGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGCC 725094 ||||||||| ||||||| ||| ||| ||||||||||||||||||||||| | | Sbjct 2465049 TGGCGCGCTACAACAAGAAGCCCACCATCACGTCGCGCGAGATCCAGACCGCCGTGAGGC 2464990 Query 725095 TGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 | ||| | | |||||| || |||| |||||| || |||||| |||| Sbjct 2464989 TCATCCTCCCCGGCGAGCTCGCCAAGCACGCTGTGAGCGAGGGGACCA 2464942 >seq91 Length=799544 Score = 98.7 bits (108), Expect = 1e-14 Identities = 164/233 (70%), Gaps = 8/233 (3%) Strand=Plus/Plus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 || |||||||| ||||||||||| |||||| || || ||| || | |||| || Sbjct 480035 ATATACAAGGTACTCAAGCAGGTCCACCCCGAGAC-----GGGCATT-TCGAGCAAGGCC 480088 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCG-GCACCGAGGCCGG 725029 ||| |||||||||| || |||||||||| |||| | | ||| |||||| Sbjct 480089 ATGGGGATCATGAACAGCTTCATCAACGACATCTTCGAGAAGCTAGCGCAG-GAGGCCTC 480147 Query 725030 TCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGT 725089 | |||| |||| |||||| ||| ||| | |||| ||||||||||| || || Sbjct 480148 GAGGTTGGCTCGCTACAACAAAAAGCCCACAATCACCTCGCGGGAGATCCAGACGGCGGT 480207 Query 725090 GCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || || ||| | | |||||| || |||| ||| ||||| ||||| || |||| Sbjct 480208 TCGTCTCATCCTTCCCGGCGAGCTCGCCAAGCATGCCGTGTCCGAAGGGACCA 480260 >seq74 Length=970821 Score = 98.7 bits (108), Expect = 1e-14 Identities = 164/233 (70%), Gaps = 8/233 (3%) Strand=Plus/Minus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 || |||||||| ||||||||||| |||||| || || ||| || | |||| || Sbjct 200212 ATATACAAGGTACTCAAGCAGGTCCACCCCGAGAC-----GGGCATT-TCGAGCAAGGCC 200159 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCG-GCACCGAGGCCGG 725029 ||| |||||||||| || |||||||||| |||| | | ||| |||||| Sbjct 200158 ATGGGGATCATGAACAGCTTCATCAACGACATCTTCGAGAAGCTAGCGCAG-GAGGCCTC 200100 Query 725030 TCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGT 725089 | |||| |||| |||||| ||| ||| | |||| ||||||||||| || || Sbjct 200099 GAGGTTGGCTCGCTACAACAAAAAGCCCACAATCACCTCGCGGGAGATCCAGACGGCGGT 200040 Query 725090 GCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || || ||| | | |||||| || |||| ||| ||||| ||||| || |||| Sbjct 200039 TCGTCTCATCCTTCCCGGCGAGCTCGCCAAGCATGCCGTGTCCGAAGGGACCA 199987 >seq87 Length=830751 Score = 93.3 bits (102), Expect = 6e-13 Identities = 167/235 (71%), Gaps = 13/235 (6%) Strand=Plus/Minus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||| |||||||||||||||||| || || || || ||| || ||||| | | Sbjct 159866 ATCTTCAAGGTGCTCAAGCAGGTCCATCCA-GACACG--GGGATCTCGTCCAA---GGCT 159813 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCG-AGGCCGG 725029 ||| ||||||| |||| || |||||||||| | || ||| ||| | |||| | Sbjct 159812 ATGGGGATCATGGACTC-TTCATCAACGACATCTTTGAGAAGCTCG-CACAGGAGGC--G 159757 Query 725030 TCGC--CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCC 725087 |||| ||||||| || ||||||| ||| || | | |||||||||||||||| Sbjct 159756 TCGCGGCTGGCGCTCTACAACAAGAAGCCCACCGTCACCTCTCGCGAGATCCAGACCGGG 159697 Query 725088 GTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||| | |||| | | || || || |||| ||||||||| |||||||| |||| Sbjct 159696 GTGAGGTTGATTCTCCCGGGAGAGCTCGCCAAGCACGCCGTGTCCGAGGGGACCA 159642 >seq41 Length=1743703 Score = 89.7 bits (98), Expect = 7e-12 Identities = 208/312 (67%), Gaps = 10/312 (3%) Strand=Plus/Minus Query 1812957 CCGTGCCGATGGGCGCCGCCTGGCCCAGGATGATGGGCTCCGTGACCGAGCCGTCGGTGA 1813016 |||| |||||||| || ||| || || |||||| || ||||| | | ||| Sbjct 513620 CCGTCCCGATGGGAGCTAGCTGCCCGAGCATGATGTTTTCGGTGAC------GCCCCTGA 513567 Query 1813017 TCTTGTCGGTCTCGGCAAAGGCCGCCGCGTCAAAGAGGATGTCGACAGTCTCCTCAAAAG 1813076 | ||| | ||| ||||| |||||||||| | ||||||||| || ||||| || || | Sbjct 513566 GATGGTCCGCCTCAGCAAACACCGCCGCGTCCAGGAGGATGTCCACCGTCTCTTCGAACG 513507 Query 1813077 AGGCGCGCGACAGAAAACCGTGGTCGGCGCGGTTAAAGCCGTGCCGCGTGACGGCCACCA 1813136 || |||| || ||| |||| |||||| | ||||| || |||| |||| | Sbjct 513506 AGCAGCGCATCATCGGGCCGGTGTCGTTGCGGTTGATACCGTGGCGAGTGATCGCCATGA 513447 Query 1813137 CTGAGCCGCGGCAACACATGGTGTCGGTGGCCAGCGCAAAGTGGCGGTCGTTGACATAGG 1813196 ||| ||| || |||| |||| | || | ||| | || |||||| |||| Sbjct 513446 GGTGGCCCCGGTAAGTCATGACGTCGCACAGGATGGCCAGGTGCCTGTAGTTGACGTAGG 513387 Query 1813197 TGCCGTCAAAGGAGATCACGGCCTTGATCTCG--GAAAAGAGCACGGCCACGGCAGCCTC 1813254 |||||| ||||| || || || ||| ||| || ||||| | | | | ||||| Sbjct 513386 AGCCGTCGAAGGATATGACTTCCCTGAGCTCCTTGAGGAGAGCTTGCCT--GACGGCCTC 513329 Query 1813255 TATGCCCAGCAC 1813266 ||||||||||| Sbjct 513328 GATGCCCAGCAC 513317 >seq90 Length=797443 Score = 86.0 bits (94), Expect = 9e-11 Identities = 207/312 (66%), Gaps = 10/312 (3%) Strand=Plus/Minus Query 1812957 CCGTGCCGATGGGCGCCGCCTGGCCCAGGATGATGGGCTCCGTGACCGAGCCGTCGGTGA 1813016 |||| |||||||| || ||| || || |||||| || ||||| | | ||| Sbjct 458528 CCGTCCCGATGGGAGCTAGCTGCCCGAGCATGATGTTTTCGGTGAC------GCCCCTGA 458475 Query 1813017 TCTTGTCGGTCTCGGCAAAGGCCGCCGCGTCAAAGAGGATGTCGACAGTCTCCTCAAAAG 1813076 | ||| | ||||||||| ||||||| || | ||||||||| || ||||| || || | Sbjct 458474 GATGGTCCGCCTCGGCAAACACCGCCGCATCTAGGAGGATGTCCACCGTCTCTTCGAACG 458415 Query 1813077 AGGCGCGCGACAGAAAACCGTGGTCGGCGCGGTTAAAGCCGTGCCGCGTGACGGCCACCA 1813136 || |||| || || |||| |||||| | ||||| || |||| |||| | Sbjct 458414 AGCAGCGCATCATCGGGCCCGTGTCGTTGCGGTTGATACCGTGGCGAGTGATCGCCATGA 458355 Query 1813137 CTGAGCCGCGGCAACACATGGTGTCGGTGGCCAGCGCAAAGTGGCGGTCGTTGACATAGG 1813196 ||| ||| || |||| |||| | || | ||| | || |||||| |||| Sbjct 458354 GGTGGCCCCGGTAAGTCATGACGTCGCACAGGATGGCCAGGTGCCTGTAGTTGACGTAGG 458295 Query 1813197 TGCCGTCAAAGGAGATCACGGCCTTGATCTCG--GAAAAGAGCACGGCCACGGCAGCCTC 1813254 |||||| ||||| || || || ||| ||| || ||||| | | | | ||||| Sbjct 458294 AGCCGTCGAAGGATATGACTTCCCTGAGCTCCTTGAGGAGAGCTTGCCT--GACGGCCTC 458237 Query 1813255 TATGCCCAGCAC 1813266 ||||||||||| Sbjct 458236 GATGCCCAGCAC 458225 >seq6 Length=4135178 Score = 86.0 bits (94), Expect = 9e-11 Identities = 173/251 (69%), Gaps = 12/251 (5%) Strand=Plus/Plus Query 724895 CTCGTACTCGTCCTTTATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCC 724954 ||||||| | || ||||||||||| |||||||| || ||||| || | | | | Sbjct 1797551 CTCGTACAAGATCTACATCTACAAGGTACTCAAGCAAGTCCACCCG-GA--CATCAG--C 1797605 Query 724955 ATCCTCCAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCAT 725014 ||| || | ||| ||||| ||||||||| | ||| | || ||| |||| || | Sbjct 1797606 ATC-TCGATCAAAGCCATGAACATCATGAACAGCCTGGTCCATGATATGTTCGAGCGGCT 1797664 Query 725015 CGGCACCGAGGCCGGTCGCCTGGCGCG---CTCCAACAAGCGCAACACGATCGGCACGCG 725071 |||||||||||| || ||||| || | |||||||| ||| ||| | || Sbjct 1797665 GTCCACCGAGGCCGGGCGGCTGGCTCGATACAGCAACAAGC---CCACCATCCAGAGCCG 1797721 Query 725072 CGAGATCCAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTC 725131 |||| ||||| || | || | || ||| | | ||||| || || | |||||| |||| Sbjct 1797722 CGAGGTCCAGGCCTCGGTCAGGCTCATCTTCCCTGGCGAGCTCGCAAAGCACGCAATCTC 1797781 Query 725132 CGAGGGCACCA 725142 |||||| |||| Sbjct 1797782 CGAGGGAACCA 1797792 >seq2 Length=6181961 Score = 86.0 bits (94), Expect = 9e-11 Identities = 174/251 (69%), Gaps = 12/251 (5%) Strand=Plus/Plus Query 724895 CTCGTACTCGTCCTTTATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCC 724954 ||||||| | || ||||||||||| |||||||| || ||||| || | | | | Sbjct 5592294 CTCGTACAAGATCTACATCTACAAGGTACTCAAGCAAGTCCACCCG-GA--CATCAG--C 5592348 Query 724955 ATCCTCCAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCAT 725014 ||| || | ||| ||||| ||||||||| | ||| | || ||| |||| || | Sbjct 5592349 ATC-TCGATCAAAGCCATGAACATCATGAACAGCCTGGTCCATGATATGTTCGAGCGGCT 5592407 Query 725015 CGGCACCGAGGCCGGTCGCCTGGCGCG---CTCCAACAAGCGCAACACGATCGGCACGCG 725071 |||||||||||| || ||||| || | |||||||| || || || | | || Sbjct 5592408 GTCCACCGAGGCCGGGCGGCTGGCTCGATACAGCAACAAGCCCACCA--TTCAG-AGCCG 5592464 Query 725072 CGAGATCCAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTC 725131 |||| ||||| || | || | || ||| | | ||||| || || | |||||| |||| Sbjct 5592465 CGAGGTCCAGGCCTCGGTCAGGCTCATCTTCCCTGGCGAGCTCGCAAAGCACGCAATCTC 5592524 Query 725132 CGAGGGCACCA 725142 |||||| |||| Sbjct 5592525 CGAGGGAACCA 5592535 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177738089506796