Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Selaginella_20moellendorffii_20[refseq_20GCF_5F000143415.3_202010- 07-06] 758 sequences; 212,501,708 total letters Query= NC_026926.1 Length=192108 Score E Sequences producing significant alignments: (Bits) Value seq758 650 0.0 >seq758 Length=186484 Score = 650 bits (720), Expect = 0.0 Identities = 736/984 (75%), Gaps = 2/984 (0%) Strand=Plus/Plus Query 180981 TTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACTG 181040 |||||||| ||| | || ||| | || ||||| || | || |||||||| |||||| Sbjct 93109 TTCTGCGATTGGATCACCAGCACCGAAAATCGCCTTTACATTGGGTGGTTCGGTGTACTG 93168 Query 181041 ATGATTCCAACTCTGTTGGCAGCAACTATCTGT-TTCATCGTCGCCTTCGTCGCTGCTCC 181099 ||||| || || ||||| | ||||| || || ||||| || || |||| ||||| Sbjct 93169 ATGATCCCGACCCTGTTAACTGCAACC-TCCGTATTCATTACTGCTTTTATCGCAGCTCC 93227 Query 181100 CCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACAA 181159 || || || || ||||| || || || ||||| ||||||| || || || || ||||| Sbjct 93228 GCCAGTAGATATTGACGGTATTCGCGAGCCCGTTTCTGGTTCTCTTATATACGGGAACAA 93287 Query 181160 CATCATCTCTGGTGCAGTTGTTCCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCAT 181219 || ||||||||||| || | || | ||| ||| || ||| | |||||||| ||||| Sbjct 93288 TATAATCTCTGGTGCTATTATCCCCACCTCCGCCGCTATCGGTTTGCACTTCTACCCCAT 93347 Query 181220 CTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAGT 181279 |||||||| ||||| ||||||| ||||| || ||||| ||||| | | |||| | || Sbjct 93348 TTGGGAAGCGGCATCTATTGATGAATGGCTATACAACGGCGGTCCCTACGAACTAATCGT 93407 Query 181280 CTTTCACTTCCTTATCGGCATTTATGCATACATGGGACGTGAATGGGAACTCTCTTACCG 181339 |||||||||| | || | | |||||||| ||||| |||||||| | ||| Sbjct 93408 TCTTCACTTCCTGCTTGGAGTAGCTTGCTACATGGGTCGTGAGTGGGAACTTAGCTTCCG 93467 Query 181340 CTTAGGTATGCGCCCCTGGATCTGTGTTGCATACTCTGCTCCAGTCGCAGCAGCATCTGC 181399 ||| ||||||||||| |||||| |||||| ||||| || || || ||||| || | || Sbjct 93468 CTTGGGTATGCGCCCTTGGATCGCTGTTGCGTACTCAGCCCCTGTTGCAGCCGCCACCGC 93527 Query 181400 TGTATTCCTAGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCAATGCCACTTGGCAT 181459 || || | |||| ||| | |||||||| ||||| |||| ||||| | || || Sbjct 93528 CGTTTTTTTGATCTACCCTATTGGTCAAGGAAGCTTCTCCGACGGTATGCCTTTAGGAAT 93587 Query 181460 CTCTGGTACATTCAACTACATGCTTGTTTTCCAAGCAGAGCACAACATTCTGATGCATCC 181519 |||||| || ||||||| ||| | || |||||||| || |||||||| || |||||||| Sbjct 93588 CTCTGGCACCTTCAACTTTATGATCGTGTTCCAAGCTGAACACAACATCCTTATGCATCC 93647 Query 181520 CTTCCACATGTTGGGTGTCGCAGGTGTATTTGGTGGTTCACTGTTCAGTGCAATGCACGG 181579 ||||||||||||||||| || || ||||| || || || || |||||||| ||||| || Sbjct 93648 GTTCCACATGTTGGGTGTGGCTGGCGTATTCGGCGGATCTCTATTCAGTGCTATGCATGG 93707 Query 181580 TTCTTTGGTTACATCTTCACTCGTCCGTGAGACGACTGAAACTGAGTCACAGAACTATGG 181639 ||| ||||| || ||| || |||| || || ||||| | ||| || ||| || Sbjct 93708 TTCCTTGGTAACTTCTAGCCTGATCCGGGAAACCACTGAGAATGAATCCGCTAACGCGGG 93767 Query 181640 TTACAAGTTCGGACAAGAAGAAGAGACATACAACATCGTCGCCGCCCACGGTTACTTTGG 181699 ||||| ||| || || ||||| || ||||| ||||| || || || ||||||||||| || Sbjct 93768 TTACAGGTTTGGTCAGGAAGAGGAAACATATAACATTGTAGCTGCTCACGGTTACTTCGG 93827 Query 181700 TCGCTTGATCTTCCAATATGCTTCATTCAACAACTCACGTTCACTGCACTTCTTCCTCGC 181759 ||| |||||||||||||||||| || || ||||| ||||| || ||||| ||| | || Sbjct 93828 TCGATTGATCTTCCAATATGCTAGCTTTAATAACTCCCGTTCCCTACACTTTTTCTTGGC 93887 Query 181760 AGCATGGCCTGTAGTTGGAATCTGGTTCACCGCACTGGGCGTAAGCACCATGGCATTTAA 181819 || ||||| ||||| || |||||||| ||||| ||||| ||||||| ||||| || || Sbjct 93888 TGCTTGGCCAGTAGTAGGTATCTGGTTTACCGCTTTGGGCATAAGCACAATGGCTTTCAA 93947 Query 181820 CCTCAATGGATTCAACTTCAACCAGTCTATCCTCGACGGACAAGGACGTGTCCTCAACAC 181879 ||| || || |||||||| ||||| || | | || | || ||||||||| | ||||| Sbjct 93948 CCTAAACGGTTTCAACTTTAACCAATCCGTAGTTGATAGCCAGGGACGTGTCATAAACAC 94007 Query 181880 CTGGGCAGACGTGCTCAACCGTGCCGGTCTCGGCATGGAAGTCATGCACGAGCGCAACGC 181939 ||||| ||| | ||||||| ||| || || ||||| || ||||| || || ||||| Sbjct 94008 ATGGGCCGACATTATCAACCGCGCCAACCTTGGTATGGAGGTTATGCATGAACGTAACGC 94067 Query 181940 GCACAACTTCCCGCTTGATCTTGC 181963 ||||||||||| || ||||| || Sbjct 94068 TCACAACTTCCCTCTAGATCTGGC 94091 Score = 363 bits (402), Expect = 2e-95 Identities = 676/989 (68%), Gaps = 4/989 (0%) Strand=Plus/Plus Query 182391 GATCGCTTTGTCTTTGTGGGTTGGTCTGGACTCCTACTTCTTCCCACTGCTTATCTTGCC 182450 || || |||| || |||||| ||||||| || |||||||| ||| ||| | | Sbjct 33926 GACCGTTTTGCATTCGTGGGTCGGTCTGGTCTATCGCTTCTTCCTCGTGCCTATTTCTCT 33985 Query 182451 ATTGGCGGTTGGCTTACTGGGACAGCTTTTGTTACGAGTTGGTACACCCACGGTCTTGCT 182510 ||||||||| | || || ||| ||| ||| || ||||||| ||||| | ||| Sbjct 33986 CCCGGCGGTTGGTTCACGGGTACAACTTCTGTCACCTCACGGTACACTCACGGATTGGCT 34045 Query 182511 TCTTCCTATCTTGAAGGTGCTAACTTTCTTACGGCAGCTGTCTCGACGCCTGCTGATGCT 182570 |||||||| || ||| |||| |||||| | |||| || || || || | Sbjct 34046 AGTTCCTATCCGGAGGGTCGCAACTCTCTTACCGTCGCTGCATCCACCCCCGCCAACAGC 34105 Query 182571 ATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCAGGGGAATTTCCAGCGGTGG 182630 | ||||| | | | ||||||||||| ||| | || || ||||| || ||| Sbjct 34106 CCAGCACATTCCCCGCCGTTGCTTTGGGGTCCCGAGGCGCAAGGAGATTTCACCCGTTGG 34165 Query 182631 TGCCAACTTGGGGGACTCTGGAATTTCGTGGCTCTCCACGGTGCCTTCGCTCTCATTGGT 182690 |||||| | || || || |||| ||||| || ||||| ||||| || | | | || ||| Sbjct 34166 TGCCAATTAGGTGGTCTATGGACCTTCGTCGCCCTCCATGGTGCTTTTGGTTTGATGGGT 34225 Query 182691 TTCATGCTTAGGCAATTTGAACTTGCTCGC-CTGATTGGAATCA-GACCTTACAATGCGA 182748 ||| | | |||| ||||| ||||| ||| || |||| | || || || || | Sbjct 34226 CCTATGTTGCGCCAATCCGAACTCGCTCGATCTG--TGCAATCGCGTCCGTATAACGCAA 34283 Query 182749 TTGCTTTTTCTGGTCCTATTGCTGTATTCGTCAGTGTGTTCCTCATCTATCCTTTGGGAC 182808 | || ||||| | ||| || || || | || || | | | ||| |||| ||||| | Sbjct 34284 TCGCGTTTTCCGCTCCCATCGCCGTTTCTGTTCCCGTATCCTTGATCCATCCGTTGGGCC 34343 Query 182809 AGTCCTCTTGGTTTTTCGCGCCGTCCTTTGGTGTCGCGGCGATCTTCAGGTTCCTGTTGT 182868 ||||| | |||||| ||| || || ||||| || || |||||| | | | | | Sbjct 34344 AGTCCGGTCGGTTTTCCGCACCCAGCTCCGGTGTAGCAGCCATCTTCCGATCCATCCTCC 34403 Query 182869 TCCTTCAGGGTTTCCACAACTGGACACTCAACCCCTTCCATATGATGGGAGTTGCTGGTA 182928 ||| ||||||| |||| || ||||| |||||||| || |||||||||||||||||||| Sbjct 34404 TCCCTCAGGGTCTCCATAATTGGACCCTCAACCCGTTTCATATGATGGGAGTTGCTGGAG 34463 Query 182929 TACTGGGTGGAGCACTGCTCAGTGCTATCCATGGTGTCACAGTAGAGAATACCTTGTATG 182988 ||| ||||| || | | |||||| || || | || || |||||||| ||| | Sbjct 34464 TACCGGGTGCTGCTCCCCCACGTGCTACTCACGGCGCAACCGTGGAGAATACACTGTTCG 34523 Query 182989 AAGATGGAGAACAGGCAAACACATTTAAAGCGTTCGATTCCACTCAGGAGGAGGAGACCT 183048 | ||||| || || || ||||| || | | || | || || || ||||| | Sbjct 34524 AGGATGGTGATGGCGCGAATACATTCCGCGCCTCCAATCCGACCCAATCTGAAGAGACTT 34583 Query 183049 ATTCGATGGTTACAGCGAATCGTTTTTGGTCACAAATCTTCGGGGTTGCGTTTAGCAATA 183108 |||| |||||||| || ||||| |||||||| |||| | ||| ||||| ||| | Sbjct 34584 ATTCCATGGTTACTGCTAATCGCTTTTGGTCCCAAACATCCGGTGTTGCCCCCCCCAACA 34643 Query 183109 AGCGTTGGTTGCACTTCTTTATGTTGTTTGTTCCTGTCATGGGTCTTTGGGTCTCTTCTA 183168 | ||| ||| |||||| ||||| || || || |||| ||| || | | ||| Sbjct 34644 AACGTCGGTCACACTTCCCCATGTTATTCGTACCCGTCACTGGTTCACGGATGAGTGCTA 34703 Query 183169 TTGGGATCATTGGGCTTGCTCTTAATCTTCGTGCTTATGATTTTGTGAGTCAAGAGATTA 183228 |||| | |||| || || | ||||| || || ||||| || || || ||| | Sbjct 34704 TTGGAGTAGTTGGTCTAGCCCCGAATCTGCGGGCGTATGACTTCGTCTCCCAGGAGGTGC 34763 Query 183229 GAGCAGCAGAAGATCCTGAGTTCGAGACGTTCTACACAAAGAACATCCTTCTCAATGAAG 183288 | |||||||||||||| |||||||| || ||||||||||| || || ||||| | Sbjct 34764 GCGCAGCAGAAGATCCCGAGTTCGAAACTCCTTACACAAAGAATATTCTGTCGAATGAGG 34823 Query 183289 GACTACGTGCTTGGTTGGCACCTGCCGATCAACCACATGAAAACTTCATCTTCCCTGAAG 183348 | | ||||||||| ||||| || ||||| || ||||||||| || | ||||| || | Sbjct 34824 GTATTCGTGCTTGGATGGCAGCTCAGGATCAGCCTCATGAAAACCTCGTATTCCCCGAGG 34883 Query 183349 AAGTTCTACCTAGAGGTAACGCACTGTGA 183377 | |||||||| | || ||||| || ||| Sbjct 34884 AGGTTCTACCCCGTGGAAACGCTCTTTGA 34912 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 614611776498240