Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Selaginella_20moellendorffii_20[refseq_20GCF_5F000143415.3_202010- 07-06] 758 sequences; 212,501,708 total letters Query= NC_026927.1 Length=228143 Score E Sequences producing significant alignments: (Bits) Value seq758 569 3e-157 >seq758 Length=186484 Score = 569 bits (630), Expect = 3e-157 Identities = 708/965 (73%), Gaps = 6/965 (1%) Strand=Plus/Plus Query 174489 ACCAACAATCGTCTTTACGTCGGTTGGTTCGGTGTTCTAATGATTCCTACATTGTTAGCC 174548 ||| | ||||| |||||| | || ||||||||||| || ||||| || || ||||| | Sbjct 93130 ACCGAAAATCGCCTTTACATTGGGTGGTTCGGTGTACTGATGATCCCGACCCTGTTAACT 93189 Query 174549 GCAACTGTATGT-TTCATTATCGCTTTCGTGGGTGCTCCCCCAGTGGACATCGACGGAAT 174607 ||||| | || ||||||| ||||| | | ||||| ||||| || || ||||| || Sbjct 93190 GCAAC-CTCCGTATTCATTACTGCTTTTATCGCAGCTCCGCCAGTAGATATTGACGGTAT 93248 Query 174608 CCGTGAACCAGTAGCTGGTTCACTCATGTATGGAAACAACATCATCTCTGGTGCAGTTGT 174667 || || || || ||||||| || || || || ||||| || ||||||||||| || | Sbjct 93249 TCGCGAGCCCGTTTCTGGTTCTCTTATATACGGGAACAATATAATCTCTGGTGCTATTAT 93308 Query 174668 TCCTAGTTCAAACGCAATCGGTCTACACTTCTACCCAATCTGGGAAGCAGCCACACTCGA 174727 || | || ||| |||||| | ||||||||||| || |||||||| || | | || Sbjct 93309 CCCCACCTCCGCCGCTATCGGTTTGCACTTCTACCCCATTTGGGAAGCGGCATCTATTGA 93368 Query 174728 CGAATGGCTCTACAACGGTGGTCCTTTCCAACTAGTTGTCTTCCACTTCCTTATTG--GT 174785 |||||||| |||||||| ||||| | | ||||| | || | |||||||| ||| || Sbjct 93369 TGAATGGCTATACAACGGCGGTCCCTACGAACTAATCGTTCTTCACTTCCTGCTTGGAGT 93428 Query 174786 ATCTACGCCTATATGGGACGTGAGTGGGAACTCTCTTATCGTTTAGGTATGAGACCTTGG 174845 | || ||| ||||| |||||||||||||| | || || |||||| | |||||| Sbjct 93429 AGCT--TGCTACATGGGTCGTGAGTGGGAACTTAGCTTCCGCTTGGGTATGCGCCCTTGG 93486 Query 174846 ATCTGTGTAGCATACTCTGCACCAGTTGCAGCAGCTTCAGCAGTATTCCTAGTCTATCCT 174905 ||| ||| || ||||| || || |||||||| || | || || || | |||| ||| Sbjct 93487 ATCGCTGTTGCGTACTCAGCCCCTGTTGCAGCCGCCACCGCCGTTTTTTTGATCTACCCT 93546 Query 174906 TTCGGTCAAGGTTCATTCTCAGACGCGATGCCCTTGGGTATCTCTGGAACATTCAACTAC 174965 | |||||||| ||||| |||| ||||| || || |||||||| || ||||||| Sbjct 93547 ATTGGTCAAGGAAGCTTCTCCGACGGTATGCCTTTAGGAATCTCTGGCACCTTCAACTTT 93606 Query 174966 ATGTTGGTCTTCCAAGCAGAACATAACATCTTGATGCACCCCTTCCACATGTTGGGAGTC 175025 ||| | || |||||||| ||||| |||||| | ||||| || |||||||||||||| || Sbjct 93607 ATGATCGTGTTCCAAGCTGAACACAACATCCTTATGCATCCGTTCCACATGTTGGGTGTG 93666 Query 175026 GCAGGTGTCTTCGGTGGTTCATTGTTCTCAGCGATGCATGGTTCACTTGTTACCTCTTCA 175085 || || || ||||| || || | ||| || ||||||||||| | || || ||| Sbjct 93667 GCTGGCGTATTCGGCGGATCTCTATTCAGTGCTATGCATGGTTCCTTGGTAACTTCTAGC 93726 Query 175086 CTTGTCCGTGAGACAACTGAAACTGAGTCACAGAACTATGGTTACAAGTTCGGCCAAGAA 175145 || |||| || || ||||| | ||| || ||| ||||||| ||| || || ||| Sbjct 93727 CTGATCCGGGAAACCACTGAGAATGAATCCGCTAACGCGGGTTACAGGTTTGGTCAGGAA 93786 Query 175146 GAAGAGACCTATAACATCGTGGCAGCCCATGGCTACTTCGGTCGTTTGATCTTCCAATAC 175205 || || || |||||||| || || || || || ||||||||||| |||||||||||||| Sbjct 93787 GAGGAAACATATAACATTGTAGCTGCTCACGGTTACTTCGGTCGATTGATCTTCCAATAT 93846 Query 175206 GCTTCATTCAACAACTCACGCTCACTCCACTTCTTCTTAGCCGCATGGCCAGTTGTGGGT 175265 ||| || || ||||| || || || ||||| ||||| || || |||||||| || ||| Sbjct 93847 GCTAGCTTTAATAACTCCCGTTCCCTACACTTTTTCTTGGCTGCTTGGCCAGTAGTAGGT 93906 Query 175266 ATCTGGTTCACCGCACTTGGTGTTTCCACAATGGCATTCAACCTCAATGGTTTCAACTTC 175325 |||||||| ||||| | || | ||||||||| |||||||| || ||||||||||| Sbjct 93907 ATCTGGTTTACCGCTTTGGGCATAAGCACAATGGCTTTCAACCTAAACGGTTTCAACTTT 93966 Query 175326 AACCAGTCTGTTATCGACGGACAAGGTAGAGTATTGAACACCTGGGCGGATGTTCTTAAC 175385 ||||| || || | || | || || | || | ||||| ||||| || || | ||| Sbjct 93967 AACCAATCCGTAGTTGATAGCCAGGGACGTGTCATAAACACATGGGCCGACATTATCAAC 94026 Query 175386 AGAGCTGGTCTTGGGATGGAAGTAATGCATGAGAGAAATGCACACAACTTCCCACTAGAT 175445 | || ||||| ||||| || |||||||| | || || ||||||||||| |||||| Sbjct 94027 CGCGCCAACCTTGGTATGGAGGTTATGCATGAACGTAACGCTCACAACTTCCCTCTAGAT 94086 Query 175446 TTGGC 175450 |||| Sbjct 94087 CTGGC 94091 Score = 248 bits (274), Expect = 1e-60 Identities = 639/969 (66%), Gaps = 6/969 (1%) Strand=Plus/Plus Query 175903 GGTCTGGATTACTACTTCTTCCCACTGCTTATCTTGCCATTGGCGGCTGGCTTACTGGCA 175962 ||||||| || |||||||| ||| ||| | | ||||| ||| | || || | Sbjct 33948 GGTCTGGTCTATCGCTTCTTCCTCGTGCCTATTTCTCTCCCGGCGGTTGGTTCACGGGTA 34007 Query 175963 CAACTTTTGTCACGAGTTGGTACACCCATGGTCTTGCTTCTTCCTATCTTGAGGGTGCTA 176022 |||||| |||||| ||||||| || || | ||| |||||||| |||||| | Sbjct 34008 CAACTTCTGTCACCTCACGGTACACTCACGGATTGGCTAGTTCCTATCCGGAGGGTCGCA 34067 Query 176023 ACTTTCTCACAGCGGCTGTCTCGACTCCTGCTGATGCTATGGGTCATTCTCTTCTTCTAC 176082 ||| ||| || | |||| || || || || | | ||||| | | | | Sbjct 34068 ACTCTCTTACCGTCGCTGCATCCACCCCCGCCAACAGCCCAGCACATTCCCCGCCGTTGC 34127 Query 176083 TTTGGGGTCCTGAATCTCAGGGCGACTTCCAGCGGTGGCTCCAACTTGGAGGGCTTTGGT 176142 |||||||||| || | || || || ||| || ||| |||| | || || || ||| Sbjct 34128 TTTGGGGTCCCGAGGCGCAAGGAGATTTCACCCGTTGGTGCCAATTAGGTGGTCTATGGA 34187 Query 176143 CCTTTGTTGCTCTCCACGGTGCCTTCGCTCTGATTGGATTCATGCTTCGTCAGTTTGAAC 176202 |||| || || ||||| ||||| || | | |||| || ||| | || || | |||| Sbjct 34188 CCTTCGTCGCCCTCCATGGTGCTTTTGGTTTGATGGGTCCTATGTTGCGCCAATCCGAAC 34247 Query 176203 TGGCAAGACTCATTGGTATC-CGTCCCTACAACGCTATTGCATTCAGTGGTCCTATCGCT 176261 | || || || || ||| ||||| || ||||| || || || | ||| ||||| Sbjct 34248 TCGCTCGA-TCTGTGCAATCGCGTCCGTATAACGCAATCGCGTTTTCCGCTCCCATCGCC 34306 Query 176262 GTATTTGT--CAGTGTGTTTCTTCTATACCCACTAGGTCAATCTTCCTGGTTCTTTGCCC 176319 || | ||| | || | || || || || | || || || |||| | || | Sbjct 34307 GTTTCTGTTCCCGTATCCTTGATCCAT--CCGTTGGGCCAGTCCGGTCGGTTTTCCGCAC 34364 Query 176320 CCTCCTTTGGTGTGGCAGCAATCTTTAGATTCCTATTGTTTCTTCAGGGTTTCCACAACT 176379 || || ||||| ||||| ||||| ||| | | | | | ||||||| |||| || | Sbjct 34365 CCAGCTCCGGTGTAGCAGCCATCTTCCGATCCATCCTCCTCCCTCAGGGTCTCCATAATT 34424 Query 176380 GGACACTGAACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGTGGAGCACTACTAT 176439 |||| || ||||| || |||||||||||||||||||| ||| |||| || | | | Sbjct 34425 GGACCCTCAACCCGTTTCATATGATGGGAGTTGCTGGAGTACCGGGTGCTGCTCCCCCAC 34484 Query 176440 CTGCAATCCATGGCGTTACTGTTGAAAATACCCTATATGAAGATGGAGAACAGAACAACA 176499 ||| | || |||| || || || ||||| || | || ||||| || || | Sbjct 34485 GTGCTACTCACGGCGCAACCGTGGAGAATACACTGTTCGAGGATGGTGATGGCGCGAATA 34544 Query 176500 CCTTCACTGCGTTCGATTCCACGCAGGAGGAAGAGACCTATTCGATGGTTACTGCGAACC 176559 | ||| || | | || | || || |||||||| ||||| ||||||||||| || | Sbjct 34545 CATTCCGCGCCTCCAATCCGACCCAATCTGAAGAGACTTATTCCATGGTTACTGCTAATC 34604 Query 176560 GCTTCTGGTCGCAAATCTTCGGGGTTGCGTTTAGTAATAAGCGTTGGCTTCACTTCTTTA 176619 |||| ||||| |||| | ||| ||||| || || ||| || |||||| | Sbjct 34605 GCTTTTGGTCCCAAACATCCGGTGTTGCCCCCCCCAACAAACGTCGGTCACACTTCCCCA 34664 Query 176620 TGTTGTTTGTCCCTGTCATGGGTCTTTGGGTCTCAAGTATTGGCATCATTGGGCTTGCTC 176679 |||| || || || |||| ||| || | |||||| | |||| || || | Sbjct 34665 TGTTATTCGTACCCGTCACTGGTTCACGGATGAGTGCTATTGGAGTAGTTGGTCTAGCCC 34724 Query 176680 TTAATCTTCGTGCTTATGATTTTGTGAGCCAAGAGATTAGAGCAGCAGAAGATCCTGAGT 176739 ||||| || || ||||| || || ||| ||| | | |||||||||||||| |||| Sbjct 34725 CGAATCTGCGGGCGTATGACTTCGTCTCCCAGGAGGTGCGCGCAGCAGAAGATCCCGAGT 34784 Query 176740 TTGAAACTTTCTACACAAAGAACATCCTTCTTAACGAAGGACTAAGAGCATGGATGGCAC 176799 | |||||| ||||||||||| || || || || || | | || ||||||||| Sbjct 34785 TCGAAACTCCTTACACAAAGAATATTCTGTCGAATGAGGGTATTCGTGCTTGGATGGCAG 34844 Query 176800 CTGTGGATCAACCACATGAGTCATTTGTATTCCCAGAAGAAGTTCTACCTAGAGGTAACG 176859 || |||||| || ||||| | |||||||| || || |||||||| | || |||| Sbjct 34845 CTCAGGATCAGCCTCATGAAAACCTCGTATTCCCCGAGGAGGTTCTACCCCGTGGAAACG 34904 Query 176860 CATTGTGAT 176868 | | |||| Sbjct 34905 CTCTTTGAT 34913 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 729922683917040