Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Selaginella_20moellendorffii_20[refseq_20GCF_5F000143415.3_202010- 07-06] 758 sequences; 212,501,708 total letters Query= NC_026928.1 Length=189418 Score E Sequences producing significant alignments: (Bits) Value seq758 666 0.0 >seq758 Length=186484 Score = 666 bits (738), Expect = 0.0 Identities = 743/986 (75%), Gaps = 6/986 (1%) Strand=Plus/Plus Query 177849 TTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACTG 177908 |||||||| ||| | || ||| | || ||||| || | || |||||||| |||||| Sbjct 93109 TTCTGCGATTGGATCACCAGCACCGAAAATCGCCTTTACATTGGGTGGTTCGGTGTACTG 93168 Query 177909 ATGATTCCAACTCTGTTGGCAGCAACTATCTGT-TTCATCGTCGCCTTCGTCGCTGCTCC 177967 ||||| || || ||||| | ||||| || || ||||| || || |||| ||||| Sbjct 93169 ATGATCCCGACCCTGTTAACTGCAAC-CTCCGTATTCATTACTGCTTTTATCGCAGCTCC 93227 Query 177968 CCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGCAACAA 178027 || || || || ||||| || || || ||||| ||||||| || || || || ||||| Sbjct 93228 GCCAGTAGATATTGACGGTATTCGCGAGCCCGTTTCTGGTTCTCTTATATACGGGAACAA 93287 Query 178028 CATCATCTCTGGTGCAGTTGTTCCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCAT 178087 || ||||||||||| || | || | ||| ||| || ||| | |||||||| ||||| Sbjct 93288 TATAATCTCTGGTGCTATTATCCCCACCTCCGCCGCTATCGGTTTGCACTTCTACCCCAT 93347 Query 178088 CTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAGT 178147 |||||||| ||||| ||||||| ||||| || ||||| ||||| | | |||| | || Sbjct 93348 TTGGGAAGCGGCATCTATTGATGAATGGCTATACAACGGCGGTCCCTACGAACTAATCGT 93407 Query 178148 ATTTCACTTCCTCATTG--GTATCTATGCATACATGGGACGTGAGTGGGAACTTTCATAC 178205 |||||||||| ||| ||| || ||| |||||||| ||||||||||||||| | | Sbjct 93408 TCTTCACTTCCTGCTTGGAGTAGCT-TGC-TACATGGGTCGTGAGTGGGAACTTAGCTTC 93465 Query 178206 CGTTTAGGTATGCGCCCCTGGATCTGTGTAGCATACTCTGCTCCAGTAGCAGCAGCATCG 178265 || || ||||||||||| |||||| ||| || ||||| || || || ||||| || | Sbjct 93466 CGCTTGGGTATGCGCCCTTGGATCGCTGTTGCGTACTCAGCCCCTGTTGCAGCCGCCACC 93525 Query 178266 GCAGTATTCCTGGTCTATCCTTTCGGTCAAGGTTCATTTTCTGACGCAATGCCACTTGGC 178325 || || || || |||| ||| | |||||||| || || |||| ||||| | || Sbjct 93526 GCCGTTTTTTTGATCTACCCTATTGGTCAAGGAAGCTTCTCCGACGGTATGCCTTTAGGA 93585 Query 178326 ATCTCTGGTACATTCAACTACATGCTTGTTTTCCAAGCAGAACACAACATTCTGATGCAC 178385 |||||||| || ||||||| ||| | || |||||||| ||||||||||| || ||||| Sbjct 93586 ATCTCTGGCACCTTCAACTTTATGATCGTGTTCCAAGCTGAACACAACATCCTTATGCAT 93645 Query 178386 CCCTTCCACATGTTGGGTGTCGCAGGTGTATTCGGTGGTTCACTGTTCAGTGCAATGCAC 178445 || ||||||||||||||||| || || |||||||| || || || |||||||| ||||| Sbjct 93646 CCGTTCCACATGTTGGGTGTGGCTGGCGTATTCGGCGGATCTCTATTCAGTGCTATGCAT 93705 Query 178446 GGTTCTTTGGTTACATCTTCACTCGTTCGTGAAACGACTGAAACAGAATCACAGAACTAT 178505 ||||| ||||| || ||| || | || ||||| ||||| | ||||| ||| Sbjct 93706 GGTTCCTTGGTAACTTCTAGCCTGATCCGGGAAACCACTGAGAATGAATCCGCTAACGCG 93765 Query 178506 GGTTATAAGTTCGGACAAGAAGAAGAGACATACAACATCGTTGCAGCACATGGCTACTTC 178565 ||||| | ||| || || ||||| || ||||| ||||| || || || || || |||||| Sbjct 93766 GGTTACAGGTTTGGTCAGGAAGAGGAAACATATAACATTGTAGCTGCTCACGGTTACTTC 93825 Query 178566 GGTCGTTTGATCTTCCAATATGCTTCATTCAACAACTCACGTTCACTGCACTTCTTCCTC 178625 ||||| |||||||||||||||||| || || ||||| ||||| || ||||| ||| | Sbjct 93826 GGTCGATTGATCTTCCAATATGCTAGCTTTAATAACTCCCGTTCCCTACACTTTTTCTTG 93885 Query 178626 GCAGCATGGCCTGTAGTTGGAATCTGGTTCACCGCACTGGGCGTAAGCACCATGGCATTT 178685 || || ||||| ||||| || |||||||| ||||| ||||| ||||||| ||||| || Sbjct 93886 GCTGCTTGGCCAGTAGTAGGTATCTGGTTTACCGCTTTGGGCATAAGCACAATGGCTTTC 93945 Query 178686 AACCTCAATGGATTCAACTTCAACCAGTCCATCCTCGACGGACAAGGACGTGTCCTCAAC 178745 ||||| || || |||||||| ||||| ||| | | || | || ||||||||| | ||| Sbjct 93946 AACCTAAACGGTTTCAACTTTAACCAATCCGTAGTTGATAGCCAGGGACGTGTCATAAAC 94005 Query 178746 ACATGGGCAGACGTGCTCAACCGTGCCGGTCTCGGCATGGAAGTCATGCACGAGCGCAAC 178805 |||||||| ||| | ||||||| ||| || || ||||| || ||||| || || ||| Sbjct 94006 ACATGGGCCGACATTATCAACCGCGCCAACCTTGGTATGGAGGTTATGCATGAACGTAAC 94065 Query 178806 GCGCACAACTTCCCGCTTGATCTTGC 178831 || ||||||||||| || ||||| || Sbjct 94066 GCTCACAACTTCCCTCTAGATCTGGC 94091 Score = 333 bits (368), Expect = 3e-86 Identities = 658/970 (68%), Gaps = 4/970 (0%) Strand=Plus/Plus Query 179253 GATCGCTTTGTCTTTGTGGGTTGGTCTGGACTCCTACTTCTTCCCACTGCTTATCTTGCC 179312 || || |||| || |||||| ||||||| || |||||||| ||| ||| | | Sbjct 33926 GACCGTTTTGCATTCGTGGGTCGGTCTGGTCTATCGCTTCTTCCTCGTGCCTATTTCTCT 33985 Query 179313 ATTGGCGGTTGGCTTACTGGGACAGCTTTTGTTACGAGTTGGTACACCCACGGTCTTGCT 179372 ||||||||| | || || ||| ||| ||| || ||||||| ||||| | ||| Sbjct 33986 CCCGGCGGTTGGTTCACGGGTACAACTTCTGTCACCTCACGGTACACTCACGGATTGGCT 34045 Query 179373 AGTTCCTATCTTGAGGGTGCTAACTTTCTTACGGCAGCTGTCTCGACGCCTGCTGATGCT 179432 |||||||||| |||||| |||| |||||| | |||| || || || || | Sbjct 34046 AGTTCCTATCCGGAGGGTCGCAACTCTCTTACCGTCGCTGCATCCACCCCCGCCAACAGC 34105 Query 179433 ATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCAGGGGAATTTCCAGCGGTGG 179492 | ||||| | | | ||||||||||| ||| | || || ||||| || ||| Sbjct 34106 CCAGCACATTCCCCGCCGTTGCTTTGGGGTCCCGAGGCGCAAGGAGATTTCACCCGTTGG 34165 Query 179493 TGCCAACTTGGGGGACTCTGGAATTTCGTGGCTCTCCACGGTGCCTTCGCTCTCATTGGT 179552 |||||| | || || || |||| ||||| || ||||| ||||| || | | | || ||| Sbjct 34166 TGCCAATTAGGTGGTCTATGGACCTTCGTCGCCCTCCATGGTGCTTTTGGTTTGATGGGT 34225 Query 179553 TTCATGCTTAGGCAATTTGAACTTGCTCGC-CTGATTGGTATCA-GACCTTACAATGCGA 179610 ||| | | |||| ||||| ||||| ||| || ||| | || || || || | Sbjct 34226 CCTATGTTGCGCCAATCCGAACTCGCTCGATCTG--TGCAATCGCGTCCGTATAACGCAA 34283 Query 179611 TTGCTTTTTCTGGTCCTATTGCTGTATTCGTCAGTGTTTTCCTCATCTATCCTTTGGGAC 179670 | || ||||| | ||| || || || | || || | | | ||| |||| ||||| | Sbjct 34284 TCGCGTTTTCCGCTCCCATCGCCGTTTCTGTTCCCGTATCCTTGATCCATCCGTTGGGCC 34343 Query 179671 AGTCCTCTTGGTTTTTCGCGCCGTCCTTTGGTGTCGCGGCGATCTTCAGGTTCTTGCTGT 179730 ||||| | |||||| ||| || || ||||| || || |||||| | | | | || Sbjct 34344 AGTCCGGTCGGTTTTCCGCACCCAGCTCCGGTGTAGCAGCCATCTTCCGATCCATCCTCC 34403 Query 179731 TCCTTCAGGGTTTCCACAACTGGACGCTCAACCCCTTCCATATGATGGGAGTTGCTGGTA 179790 ||| ||||||| |||| || ||||| |||||||| || |||||||||||||||||||| Sbjct 34404 TCCCTCAGGGTCTCCATAATTGGACCCTCAACCCGTTTCATATGATGGGAGTTGCTGGAG 34463 Query 179791 TACTAGGAGGAGCACTGCTCAGTGCTATCCATGGAGTTACTGTAGAGAATACATTGTATG 179850 ||| || | || | | |||||| || || | || || ||||||||| ||| | Sbjct 34464 TACCGGGTGCTGCTCCCCCACGTGCTACTCACGGCGCAACCGTGGAGAATACACTGTTCG 34523 Query 179851 AAGATGGAGAACAAGCAAATACCTTTAAGGCGTTTGATTCGACACAGGAAGAAGAGACTT 179910 | ||||| || || ||||| || || | || |||| || |||||||||| Sbjct 34524 AGGATGGTGATGGCGCGAATACATTCCGCGCCTCCAATCCGACCCAATCTGAAGAGACTT 34583 Query 179911 ATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGTATTGCATTTTCTAACA 179970 |||| ||||| ||||| || ||||| ||||| || | | |||| |||| | |||| Sbjct 34584 ATTCCATGGTTACTGCTAATCGCTTTTGGTCCCAAACATCCGGTGTTGCCCCCCCCAACA 34643 Query 179971 AGCGGTGGCTTCATTTTTTCATGTTGTTTGTGCCTGTTATGGGTCTATGGACATCCTCTA 180030 | || || || || |||||| || || || || | ||| | ||| ||| Sbjct 34644 AACGTCGGTCACACTTCCCCATGTTATTCGTACCCGTCACTGGTTCACGGATGAGTGCTA 34703 Query 180031 TTGGCATTATTGGTCTTGCTCTCAACCTTCGTGCTTACGATTTCGTAAGTCAGGAGATCA 180090 |||| | ||||||| || | || || || || || || ||||| |||||| | Sbjct 34704 TTGGAGTAGTTGGTCTAGCCCCGAATCTGCGGGCGTATGACTTCGTCTCCCAGGAGGTGC 34763 Query 180091 GAGCAGCAGAAGATCCCGAGTTTGAGACCTTCTACACCAAGAACATTCTTCTCAATGAAG 180150 | |||||||||||||||||||| || || ||||| ||||| ||||| ||||| | Sbjct 34764 GCGCAGCAGAAGATCCCGAGTTCGAAACTCCTTACACAAAGAATATTCTGTCGAATGAGG 34823 Query 180151 GACTACGTGCATGGTTGGCACCAGTTGATCAACCACATGAGTCATTCGTATTCCCAGAAG 180210 | | ||||| ||| ||||| | ||||| || ||||| |||||||||| || | Sbjct 34824 GTATTCGTGCTTGGATGGCAGCTCAGGATCAGCCTCATGAAAACCTCGTATTCCCCGAGG 34883 Query 180211 AAGTTCTGCC 180220 | ||||| || Sbjct 34884 AGGTTCTACC 34893 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 606003858059040