Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Selaginella_20moellendorffii_20[refseq_20GCF_5F000143415.3_202010- 07-06] 758 sequences; 212,501,708 total letters Query= NC_027130.1 Length=172688 Score E Sequences producing significant alignments: (Bits) Value seq758 646 1e-180 >seq758 Length=186484 Score = 646 bits (716), Expect = 1e-180 Identities = 744/995 (75%), Gaps = 6/995 (1%) Strand=Plus/Plus Query 158379 TTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACTG 158438 |||||||| ||| | || ||| | || ||||| || | || |||||||| |||||| Sbjct 93109 TTCTGCGATTGGATCACCAGCACCGAAAATCGCCTTTACATTGGGTGGTTCGGTGTACTG 93168 Query 158439 ATGATTCCAACTCTGTTGGCAGCAACCATCTGT-TTCATCGTCGCCTTCGTCGCTGCTCC 158497 ||||| || || ||||| | |||||| || || ||||| || || |||| ||||| Sbjct 93169 ATGATCCCGACCCTGTTAACTGCAACC-TCCGTATTCATTACTGCTTTTATCGCAGCTCC 93227 Query 158498 CCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACAA 158557 || || || || ||||| || || || ||||| ||||||| || || || || ||||| Sbjct 93228 GCCAGTAGATATTGACGGTATTCGCGAGCCCGTTTCTGGTTCTCTTATATACGGGAACAA 93287 Query 158558 CATCATCTCTGGTGCAGTTGTACCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCAT 158617 || ||||||||||| || | || | ||| ||| || ||| | |||||||| ||||| Sbjct 93288 TATAATCTCTGGTGCTATTATCCCCACCTCCGCCGCTATCGGTTTGCACTTCTACCCCAT 93347 Query 158618 CTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAGT 158677 |||||||| ||||| ||||||| ||||| || ||||| ||||| | | |||| | || Sbjct 93348 TTGGGAAGCGGCATCTATTGATGAATGGCTATACAACGGCGGTCCCTACGAACTAATCGT 93407 Query 158678 CTTTCACTTCCTTATCGGCAT--CTATGCATATATGGGACGTGAATGGGAACTTTCATAC 158735 |||||||||| | || | || ||| || ||||| ||||| ||||||||| | | Sbjct 93408 TCTTCACTTCCTGCTTGGAGTAGCT-TGC-TACATGGGTCGTGAGTGGGAACTTAGCTTC 93465 Query 158736 CGCTTAGGTATGCGCCCCTGGATCTGTGTAGCATATTCTGCACCAGTCGCTGCAGCATCT 158795 ||||| ||||||||||| |||||| ||| || || || || || || || || || | Sbjct 93466 CGCTTGGGTATGCGCCCTTGGATCGCTGTTGCGTACTCAGCCCCTGTTGCAGCCGCCACC 93525 Query 158796 GCTGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCCGATGCTATGCCTCTTGGT 158855 || || || | |||| ||| | |||||||| |||||||| | ||||||| | || Sbjct 93526 GCCGTTTTTTTGATCTACCCTATTGGTCAAGGAAGCTTCTCCGACGGTATGCCTTTAGGA 93585 Query 158856 ATCTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAACACAACATCCTTATGCAC 158915 |||||||| || || |||| ||| | || |||||||| |||||||||||||||||||| Sbjct 93586 ATCTCTGGCACCTTCAACTTTATGATCGTGTTCCAAGCTGAACACAACATCCTTATGCAT 93645 Query 158916 CCGTTCCATATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCTTTTCTCTGCTATGCAT 158975 |||||||| ||| | ||||| ||||| |||||||| |||||||| ||| |||||||||| Sbjct 93646 CCGTTCCACATGTTGGGTGTGGCTGGCGTATTCGGCGGATCTCTATTCAGTGCTATGCAT 93705 Query 158976 GGAAGTCTCGTTACTTCCTCACTCGTTCGTGAAACGACTGAAACAGAGTCACAGAACTAT 159035 || | || ||||| || | || ||||| ||||| | || || ||| Sbjct 93706 GGTTCCTTGGTAACTTCTAGCCTGATCCGGGAAACCACTGAGAATGAATCCGCTAACGCG 93765 Query 159036 GGTTACAAGTTCGGACAAGAAGAAGAAACATATAATATCGTCGCAGCCCATGGTTACTTC 159095 ||||||| ||| || || ||||| ||||||||||| || || || || || ||||||||| Sbjct 93766 GGTTACAGGTTTGGTCAGGAAGAGGAAACATATAACATTGTAGCTGCTCACGGTTACTTC 93825 Query 159096 GGTCGTTTGATCTTCCAATACGCTTCATTCAACAACTCCCGTTCCTTGCACTTCTTCCTT 159155 ||||| |||||||||||||| ||| || || |||||||||||| | ||||| ||| | Sbjct 93826 GGTCGATTGATCTTCCAATATGCTAGCTTTAATAACTCCCGTTCCCTACACTTTTTCTTG 93885 Query 159156 GCTGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTGTCAACCATGGCATTC 159215 ||||| ||||| || || || |||||||| ||||| | ||| | || ||||| ||| Sbjct 93886 GCTGCTTGGCCAGTAGTAGGTATCTGGTTTACCGCTTTGGGCATAAGCACAATGGCTTTC 93945 Query 159216 AACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAAC 159275 ||||| |||||||||||||| ||||| ||| | ||||| | ||||| ||||| | ||| Sbjct 93946 AACCTAAACGGTTTCAACTTTAACCAATCCGTAGTTGATAGCCAGGGACGTGTCATAAAC 94005 Query 159276 ACCTGGGCAGATGTACTGAACCGTGCAGGTCTGGGTATGGAAGTTATGCATGAGCGTAAC 159335 || ||||| || | | ||||| || || |||||||| ||||||||||| |||||| Sbjct 94006 ACATGGGCCGACATTATCAACCGCGCCAACCTTGGTATGGAGGTTATGCATGAACGTAAC 94065 Query 159336 GCACACAACTTCCCACTCGACCTTGCTGCTGCTGA 159370 || ||||||||||| || || || ||| | | ||| Sbjct 94066 GCTCACAACTTCCCTCTAGATCTGGCTTCCGTTGA 94100 Score = 282 bits (312), Expect = 5e-71 Identities = 659/992 (66%), Gaps = 8/992 (1%) Strand=Plus/Plus Query 159929 GATCGTTTCGTTTTTGTTGGCTGGTCTGGACTTCTTCTTCTTCCCACTGCTTATCTTGCT 159988 || ||||| | || || || ||||||| || |||||||| ||| ||| | || Sbjct 33926 GACCGTTTTGCATTCGTGGGTCGGTCTGGTCTATCGCTTCTTCCTCGTGCCTATTTCTCT 33985 Query 159989 ATTGGCGGTTGGCTTACTGGAACAACTTTCGCAACGAGCTGGTATACCCATGGACTCGCT 160048 ||||||||| | || || ||||||| | || |||| || || ||| | ||| Sbjct 33986 CCCGGCGGTTGGTTCACGGGTACAACTTCTGTCACCTCACGGTACACTCACGGATTGGCT 34045 Query 160049 AGTTCCTATCTTGAGGGTGCAAACTTTCTTACAGCGTCAGTTAGCACTCCAGCTGACGCT 160108 |||||||||| |||||| |||| |||||| | | | ||| || || || Sbjct 34046 AGTTCCTATCCGGAGGGTCGCAACTCTCTTACCGTCGCTGCATCCACCCCCGCCAACAGC 34105 Query 160109 ATGGGTCATTCTCTTCTTCTTCTCTGGGGTCCTGAGGCTCAAGGGGATTTCGTCAGGTGG 160168 | ||||| | | | || |||||||| ||||| ||||| |||||| | | ||| Sbjct 34106 CCAGCACATTCCCCGCCGTTGCTTTGGGGTCCCGAGGCGCAAGGAGATTTCACCCGTTGG 34165 Query 160169 ATCCAACTTGGGGGACTCTGGAATTTTGTGGCACTCCATGGTGCCTTCGCCCTAATTGGA 160228 |||| | || || || |||| || || || ||||||||||| || | | || || Sbjct 34166 TGCCAATTAGGTGGTCTATGGACCTTCGTCGCCCTCCATGGTGCTTTTGGTTTGATGGGT 34225 Query 160229 TTCATGCTCCGTCAGTTTGAACTGGCACGTCTCATCGGT---ATC-CGTCCTTACAATGC 160284 ||| | || || | ||||| || || ||| || ||| ||||| || || || Sbjct 34226 CCTATGTTGCGCCAATCCGAACTCGCTCG----ATCTGTGCAATCGCGTCCGTATAACGC 34281 Query 160285 TATTGCGTTCTCTGGTCCTATTGCTGTCTTTGTCAGCGTATTCCTCATCTACCCATTGGG 160344 || ||||| || | ||| || || || | ||| ||||| | | ||| | || ||||| Sbjct 34282 AATCGCGTTTTCCGCTCCCATCGCCGTTTCTGTTCCCGTATCCTTGATCCATCCGTTGGG 34341 Query 160345 TCAGTCCAGTTGGTTTTTCGCTCCGTCCTTTGGGGTGGCAGCAATCTTTAGATTCCTGTT 160404 |||||| || |||||| ||| || || || || ||||| ||||| ||| | | | Sbjct 34342 CCAGTCCGGTCGGTTTTCCGCACCCAGCTCCGGTGTAGCAGCCATCTTCCGATCCATCCT 34401 Query 160405 GTTCCTTCAAGGATTTCACAACTGGACGCTTAACCCCTTCCATATGATGGGAGTTGCTGG 160464 ||| ||| || | || || ||||| || ||||| || |||||||||||||||||||| Sbjct 34402 CCTCCCTCAGGGTCTCCATAATTGGACCCTCAACCCGTTTCATATGATGGGAGTTGCTGG 34461 Query 160465 TATACTAGGAGGAGCACTGCTCAGTGCCATCCATGGCGTTACTGTAGAGAACACACTGTA 160524 ||| || | || | | |||| | || |||| || || ||||| ||||||| Sbjct 34462 AGTACCGGGTGCTGCTCCCCCACGTGCTACTCACGGCGCAACCGTGGAGAATACACTGTT 34521 Query 160525 TGAAGATGGAGAACAAGCAAATACCTTTAAGGCGTTTGATTCGACACAGGAAGAAGAGAC 160584 || ||||| || || ||||| || || | || |||| || |||||||| Sbjct 34522 CGAGGATGGTGATGGCGCGAATACATTCCGCGCCTCCAATCCGACCCAATCTGAAGAGAC 34581 Query 160585 TTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGTATTGCGTTTTCTAA 160644 |||||| ||||| ||||| || ||||| ||||| || | | |||| |||| | || Sbjct 34582 TTATTCCATGGTTACTGCTAATCGCTTTTGGTCCCAAACATCCGGTGTTGCCCCCCCCAA 34641 Query 160645 CAAGCGGTGGCTTCATTTTTTCATGTTGTTTGTGCCTGTTATGGGTCTTTGGACATCCAG 160704 ||| || || || || |||||| || || || || | ||| ||| Sbjct 34642 CAAACGTCGGTCACACTTCCCCATGTTATTCGTACCCGTCACTGGTTCACGGATGAGTGC 34701 Query 160705 TATTGGCATTATTGGTCTTGCTCTCAATCTTCGTGCTTACGATTTCGTGAGTCAAGAGAT 160764 |||||| | ||||||| || | ||||| || || || || ||||| || ||| | Sbjct 34702 TATTGGAGTAGTTGGTCTAGCCCCGAATCTGCGGGCGTATGACTTCGTCTCCCAGGAGGT 34761 Query 160765 TAGAGCAGCAGAAGATCCAGAATTTGAGACCTTCTACACCAAGAACATCCTACTGAATGA 160824 | |||||||||||||| || || || || ||||| ||||| || || |||||| Sbjct 34762 GCGCGCAGCAGAAGATCCCGAGTTCGAAACTCCTTACACAAAGAATATTCTGTCGAATGA 34821 Query 160825 AGGACTACGTGCATGGTTAGCACCTGCCGACCAACCCCATGAGAACTTTATCTTCCCAGA 160884 || | ||||| ||| | ||| || || || || ||||| ||| | | ||||| || Sbjct 34822 GGGTATTCGTGCTTGGATGGCAGCTCAGGATCAGCCTCATGAAAACCTCGTATTCCCCGA 34881 Query 160885 AGAAGTTCTTCCTAGAGGCAACGCCCTTTAAT 160916 || ||||| || | || ||||| |||| || Sbjct 34882 GGAGGTTCTACCCCGTGGAAACGCTCTTTGAT 34913 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 552468365312640