Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Selaginella_20moellendorffii_20[refseq_20GCF_5F000143415.3_202010- 07-06] 758 sequences; 212,501,708 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq25 93.3 5e-14 seq113 84.2 3e-11 >seq25 Length=1997012 Score = 93.3 bits (102), Expect = 5e-14 Identities = 268/405 (66%), Gaps = 8/405 (2%) Strand=Plus/Plus Query 11537 TCAAAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCT 11596 ||||||||||||||||| || | | || || | ||||| |||| ||||| ||| || Sbjct 1919216 TCAAAGCCATCCATCTCCGTTAACAGCTGGTTCAAAGTTTGCTCTCGTTCATCGTTTCCT 1919275 Query 11597 GGCATACCA--CCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAA 11654 | | | | || | | | ||| | ||||||||||||||||| || | ||| |||| Sbjct 1919276 --CCTCCGATTCCTGTGCCTCTCTGCCTTCCCACCGCATCAATCTCGTCGACGAAAACAA 1919333 Query 11655 TACATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACAC 11714 | ||||| ||| || ||| | | || || || || || || || || || | Sbjct 1919334 TGCATGGAGCATTCTCCTTGGCCTTCTTGAACAGGTCCCGCACTCTCGAAGCTCCAACCC 1919393 Query 11715 CAACAAACATCTCCACAAAGTTTGCGGCAGAGCACTG-GATGAATGGGACATTTGATTCA 11773 | ||||||||||||||||| | || | ||| | || || || || || | ||| Sbjct 1919394 CGACAAACATCTCCACAAACTCTGACCCCGAG-ATTGAGAAAAACGGCACGCCAGCTTCT 1919452 Query 11774 CCCGCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGGCTTACCCGCGAGAAGGGCG 11833 || || ||||| ||| || | || || ||||| ||||| || | || || | Sbjct 1919453 CCTGCAATGGCCTTGGCCAGCAAAGTTTTCCCCGTCCCTGGAGGCCCAACCAGCAGCACA 1919512 Query 11834 CCTCGGGGGATCTTGGCACCACTTCCAAAATATCTCTCGGGTTGCTTGAGAAAATCCACA 11893 ||| || ||||| ||||| || | | |||||||| | ||| ||||| || || Sbjct 1919513 CCTTTCGGTATCTTTGCACCCACAGCAGTAAACCTCTCGGGCTTCTTTAGAAACTCTACC 1919572 Query 11894 ATCT-CTTCAAGTTCATCTTTGGCCGCGTCAATCCCCTCAACATC 11937 | || | | || | | |||| ||| |||||| || ||||||| Sbjct 1919573 ACCTCCATGAAATCCTGCTTT-GCCTCGTCAACTCCAGCAACATC 1919616 >seq113 Length=557149 Score = 84.2 bits (92), Expect = 3e-11 Identities = 266/405 (66%), Gaps = 8/405 (2%) Strand=Plus/Minus Query 11537 TCAAAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCT 11596 ||||||||||||||||| || | | || || | ||||| |||| || || ||| || Sbjct 60605 TCAAAGCCATCCATCTCCGTTAACAGCTGGTTCAAAGTTTGCTCTCGTTCGTCGTTTCCT 60546 Query 11597 GGCATACCA--CCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAA 11654 | | | | || | | | ||| | ||||||||||||||||| || | ||| |||| Sbjct 60545 --CCTCCGATTCCTGTGCCTCTCTGCCTTCCCACCGCATCAATCTCGTCGACGAAAACAA 60488 Query 11655 TACATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACAC 11714 | ||||| ||| || ||| | | || || || || || || || || || | Sbjct 60487 TGCATGGAGCATTCTCCTTGGCCTTCTTGAACAGGTCCCGCACTCTCGAAGCTCCAACCC 60428 Query 11715 CAACAAACATCTCCACAAAGTTTGCGGCAGAGCACTG-GATGAATGGGACATTTGATTCA 11773 | ||||||||||||||||| | || | ||| | || || || || || | ||| Sbjct 60427 CGACAAACATCTCCACAAACTCTGACCCCGAG-ATTGAGAAAAACGGCACGCCAGCTTCT 60369 Query 11774 CCCGCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGGCTTACCCGCGAGAAGGGCG 11833 || || ||||| ||| || | || || ||||| ||||| || | || || | Sbjct 60368 CCAGCAATGGCCTTGGCCAGCAAAGTTTTCCCCGTCCCTGGAGGCCCAACCAGCAGCACA 60309 Query 11834 CCTCGGGGGATCTTGGCACCACTTCCAAAATATCTCTCGGGTTGCTTGAGAAAATCCACA 11893 ||| || ||| | ||||| || | | |||||||| | ||| ||||| || || Sbjct 60308 CCTTTCGGTATCCTTGCACCCACAGCAGTAAACCTCTCGGGCTTCTTTAGAAACTCTACC 60249 Query 11894 ATCT-CTTCAAGTTCATCTTTGGCCGCGTCAATCCCCTCAACATC 11937 | || | | || | | |||| ||| |||||| || ||||||| Sbjct 60248 ACCTCCATGAAATCCTGCTTT-GCCTCGTCAACTCCAGCAACATC 60205 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628026049396800