Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Selaginella_20moellendorffii_20[refseq_20GCF_5F000143415.3_202010- 07-06] 758 sequences; 212,501,708 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq25 116 4e-21 seq113 109 6e-19 seq9 105 8e-18 seq1 105 8e-18 seq64 86.0 7e-12 seq39 82.4 9e-11 >seq25 Length=1997012 Score = 116 bits (128), Expect = 4e-21 Identities = 335/502 (67%), Gaps = 20/502 (4%) Strand=Plus/Plus Query 9527 TCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGCG 9586 ||||| | ||||| | || || || | || || ||||| | || || |||||| Sbjct 1919132 TCAAATCTTCCTGGCCTCAGCAGTGCAGCGTCGAGAATATCTGACCTGTTGGTGGCGGCG 1919191 Query 9587 ATGACAACAATACC--TGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTAA 9644 || || | || ||| |||| | || |||| ||||||||||| || || || ||||| | Sbjct 1919192 ATCACTATAACACCCGTGTTGCCTT--CAAAGCCATCCATCTCCGTTAACAGCTGGTTCA 1919249 Query 9645 TAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA--CCAGCACTGCGTTGCTTTCCCAC 9702 |||||| || |||||||| || || | | | | || | | | ||| ||||||| Sbjct 1919250 AAGTTTGCTCTCGTTCATCGTTTCCT--CCTCCGATTCCTGTGCCTCTCTGCCTTCCCAC 1919307 Query 9703 GGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTC--AAAG 9760 ||||||||||| || | ||| || |||||||| ||| || | | | |||| || Sbjct 1919308 CGCATCAATCTCGTCGACGAAAACAATGCATGGAGCATTCTC-CTTG-GCCTTCTTGAAC 1919365 Query 9761 AGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAA 9820 || ||||| || | | || || || || ||||||||||||||||| | || | | | Sbjct 1919366 AGGTCCCGCACTCTCGAAGCTCCAACCCCGACAAACATCTCCACAAACTCTGACCCCG-A 1919424 Query 9821 CATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACC 9879 |||| || || || || || ||| || |||||||| ||| || | ||| || || Sbjct 1919425 GATTGAGAAAAACGGCACGCCAGCTTCTCCTGCAATGGCCTTGGCCAGCAAAGTTTTCCC 1919484 Query 9880 CGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGC-GCCACTTCCAAAGT 9938 ||| ||||| || | || || ||||| || ||||| || |||| | ||| Sbjct 1919485 CGTCCCTGGAGGCCCAACCAGCAGCACACCTTTCGGTATCTTTGCACCCACAGC---AGT 1919541 Query 9939 --ATCTCTCAGGTTGCTTAAGAAAATCCACAATTTCTTCCAATTCATCTTTGGCGGCGTC 9996 | ||||| || | ||| ||||| || || | || || || | || || |||| Sbjct 1919542 AAACCTCTCGGGCTTCTTTAGAAACTCTACCACCTCCATGAAATCCTGCTTTGCCTCGTC 1919601 Query 9997 AATCCCCTCAACATCGGTAAAC 10018 || || ||||||| | |||| Sbjct 1919602 AACTCCAGCAACATCCGCAAAC 1919623 >seq113 Length=557149 Score = 109 bits (120), Expect = 6e-19 Identities = 223/321 (69%), Gaps = 14/321 (4%) Strand=Plus/Minus Query 9575 TTCGTCGCGGCGATGACAACAATACC--TGTTTCATTATCAAAACCATCCATCTCTGTCA 9632 || || |||||||| || | || ||| |||| | || |||| ||||||||||| || | Sbjct 60641 TTGGTGGCGGCGATCACTATAACACCCGTGTTGCCTT--CAAAGCCATCCATCTCCGTTA 60584 Query 9633 AAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA--CCAGCACTGCG 9690 | || ||||| | |||||| || ||||| || || || | | | | || | | | Sbjct 60583 ACAGCTGGTTCAAAGTTTGCTCTCGTTCGTCGTTTCCT--CCTCCGATTCCTGTGCCTCT 60526 Query 9691 TTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGC 9750 ||| ||||||| ||||||||||| || | ||| || |||||||| ||| || | | Sbjct 60525 CTGCCTTCCCACCGCATCAATCTCGTCGACGAAAACAATGCATGGAGCATTCTC-CTTG- 60468 Query 9751 GACTTC--AAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAG 9808 | |||| || || ||||| || | | || || || || ||||||||||||||||| Sbjct 60467 GCCTTCTTGAACAGGTCCCGCACTCTCGAAGCTCCAACCCCGACAAACATCTCCACAAAC 60408 Query 9809 TTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAG 9867 | || | | | |||| || || || || || ||| || |||||||| ||| || Sbjct 60407 TCTGACCCCG-AGATTGAGAAAAACGGCACGCCAGCTTCTCCAGCAATGGCCTTGGCCAG 60349 Query 9868 AAGAGTCTTACCCGTACCTGG 9888 | ||| || ||||| ||||| Sbjct 60348 CAAAGTTTTCCCCGTCCCTGG 60328 >seq9 Length=3666672 Score = 105 bits (116), Expect = 8e-18 Identities = 218/319 (68%), Gaps = 8/319 (3%) Strand=Plus/Plus Query 9613 AAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 9672 ||||||||||||||| || | || ||||| |||||||| || || || ||||| | Sbjct 1728010 AAAACCATCCATCTCAGTGAGCAGCTGGTTGATAGTTTGCTCGCGCTCGTCATTTCC--A 1728067 Query 9673 CATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATG 9730 | ||| ||||||| | ||| | || |||||||||||||| || ||||| || ||| Sbjct 1728068 CCACCCAGGCCAGCACCTCTCTGCCTGCCGACGGCATCAATCTCGTCGATGAACACAATG 1728127 Query 9731 CATGGTTGATTTTCGCGAGCGACT--TCAAAGAGATCCCGTACACGCTTGGCGCCCACAC 9788 ||||| | || | | | | || || || | |||| |||||| ||| || |||| Sbjct 1728128 CATGG-AGCCTTCCCCTTG-GCCTTCTCGAACAAGTCCCTTACACGGGAGGCTCCAACAC 1728185 Query 9789 CAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCAC 9848 | ||||| | |||||| || | | ||||| || || ||| || ||| | ||||| Sbjct 1728186 CGACAAAGAGCTCCACGAATTCAGAGGCGGCGCACGAGAAGAACGGCACACCGGCTTCAC 1728245 Query 9849 CCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCAC 9908 | |||| || | || || | ||| || || || ||||| || |||| ||| | Sbjct 1728246 CAGCAACAGCCCTCGCTAGCAAAGTTTTCCCAGTCCCTGGAGGGCCGACGAGCAGGCAGC 1728305 Query 9909 CTCGTGGAATCTTGGCGCC 9927 || |||||| || || || Sbjct 1728306 CTTTTGGAATTTTAGCACC 1728324 >seq1 Length=6951972 Score = 105 bits (116), Expect = 8e-18 Identities = 218/319 (68%), Gaps = 8/319 (3%) Strand=Plus/Minus Query 9613 AAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 9672 ||||||||||||||| || | || ||||| |||||||| || || || ||||| | Sbjct 3709502 AAAACCATCCATCTCAGTGAGCAGCTGGTTGATAGTTTGCTCGCGCTCGTCATTTCC--A 3709445 Query 9673 CATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATG 9730 | ||| ||||||| | ||| | || |||||||||||||| || ||||| || ||| Sbjct 3709444 CCACCCAGGCCAGCACCTCTCTGCCTGCCGACGGCATCAATCTCGTCGATGAACACAATG 3709385 Query 9731 CATGGTTGATTTTCGCGAGCGACT--TCAAAGAGATCCCGTACACGCTTGGCGCCCACAC 9788 ||||| | || | | | | || || || | |||| |||||| ||| || |||| Sbjct 3709384 CATGG-AGCCTTCCCCTTG-GCCTTCTCGAACAAGTCCCTTACACGGGAGGCTCCAACAC 3709327 Query 9789 CAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCAC 9848 | ||||| | |||||| || | | ||||| || || ||| || ||| | ||||| Sbjct 3709326 CGACAAAGAGCTCCACGAATTCAGAGGCGGCGCACGAGAAGAACGGCACACCGGCTTCAC 3709267 Query 9849 CCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCAC 9908 | |||| || | || || | ||| || || || ||||| || |||| ||| | Sbjct 3709266 CAGCAACAGCCCTCGCTAGCAAAGTTTTCCCAGTCCCTGGAGGGCCGACGAGCAGGCAGC 3709207 Query 9909 CTCGTGGAATCTTGGCGCC 9927 || |||||| || || || Sbjct 3709206 CTTTTGGAATTTTAGCACC 3709188 >seq64 Length=1151164 Score = 86.0 bits (94), Expect = 7e-12 Identities = 108/143 (76%), Gaps = 4/143 (3%) Strand=Plus/Plus Query 104695 CCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAG-A 104753 ||| ||| | |||| | ||||||||||| ||||| |||||| | ||||| ||||| | Sbjct 1110753 CCGTGATTTGTTCTATGGCCTCTGGATTCCTGATCTTTTCATGGAACGAGTT-AGGAGCA 1110811 Query 104754 GTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGA-TGCCGTGGGT 104812 | || |||||||| | |||||||| || |||| ||||| | | || ||| | |||| Sbjct 1110812 ATAGCGATTGGTCTTTGTTTTGTCCGAACGAGGCTCCTGGATTGGCTGACTGCTG-GGGT 1110870 Query 104813 GAGGAGTTTGAAGCCCTTTACAC 104835 |||||||||||| | | ||||| Sbjct 1110871 GAGGAGTTTGAAAGCTTGTACAC 1110893 >seq39 Length=1751465 Score = 82.4 bits (90), Expect = 9e-11 Identities = 107/143 (75%), Gaps = 4/143 (3%) Strand=Plus/Plus Query 104695 CCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAG-A 104753 ||| ||| | |||| | ||||||||||| || || |||||| | ||||| ||||| | Sbjct 1281171 CCGTGATTTGTTCTATGGCCTCTGGATTCCTGACCTTTTCATGGAACGAGTT-AGGAGCA 1281229 Query 104754 GTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGA-TGCCGTGGGT 104812 | || |||||||||| || ||||| || |||| ||||| | | || ||| | |||| Sbjct 1281230 ATAGCGATTGGTCTCTGTTCTGTCCGAACGAGGCTCCTGGATTGGCTGACTGCTG-GGGT 1281288 Query 104813 GAGGAGTTTGAAGCCCTTTACAC 104835 |||||||||||| | | ||||| Sbjct 1281289 GAGGAGTTTGAAAGCTTGTACAC 1281311 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583255273603920