Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Selaginella_20moellendorffii_20[refseq_20GCF_5F000143415.3_202010- 07-06] 758 sequences; 212,501,708 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq23 89.7 6e-13 seq18 89.7 6e-13 seq4 89.7 6e-13 seq102 86.0 7e-12 seq89 86.0 7e-12 seq43 86.0 7e-12 seq10 86.0 7e-12 seq29 84.2 2e-11 seq139 82.4 8e-11 >seq23 Length=2094916 Score = 89.7 bits (98), Expect = 6e-13 Identities = 66/76 (87%), Gaps = 1/76 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 1063519 TGCTTTCACTGAGAGTTGAACTCAGGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 1063460 Query 79684 TGAGCTACGAAAGCAA 79699 ||||||| |||||||| Sbjct 1063459 TGAGCTATGAAAGCAA 1063444 >seq18 Length=2450372 Score = 89.7 bits (98), Expect = 6e-13 Identities = 66/76 (87%), Gaps = 1/76 (1%) Strand=Plus/Plus Query 79623 ACTGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCA 79681 ||||||||| |||| |||| |||| ||||||||||||||||||||||||||| |||| Sbjct 1961309 ACTGCTTTCACTGAGAGTTGAACTCAGGACCTCCCGCTTACTAAACGGGTGCTCTGACCA 1961368 Query 79682 ATTGAGCTACGAAAGC 79697 | ||||||| |||||| Sbjct 1961369 ACTGAGCTATGAAAGC 1961384 >seq4 Length=4340499 Score = 89.7 bits (98), Expect = 6e-13 Identities = 66/76 (87%), Gaps = 1/76 (1%) Strand=Plus/Plus Query 79623 ACTGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCA 79681 ||||||||| |||| |||| |||| ||||||||||||||||||||||||||| |||| Sbjct 3390366 ACTGCTTTCACTGAGAGTTGAACTCAGGACCTCCCGCTTACTAAACGGGTGCTCTGACCA 3390425 Query 79682 ATTGAGCTACGAAAGC 79697 | ||||||| |||||| Sbjct 3390426 ACTGAGCTATGAAAGC 3390441 >seq102 Length=641370 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| ||||| |||| ||||||||||||||||||||||||||| |||| Sbjct 313539 TGCTTTCACTGAGATTTGAACTCAGGACCTCCCGCTTACTAAACGGGTGCTCTGACCAGC 313598 Query 79684 TGAGCTACGAAAGC 79697 ||||||| |||||| Sbjct 313599 TGAGCTATGAAAGC 313612 >seq89 Length=814213 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 148100 TGCTTTCACTGAGAGTTGAACTCAGGACCTCCCGCTTACTAAACGGGTGCTCTGACCAAA 148159 Query 79684 TGAGCTACGAAAGC 79697 ||||||| |||||| Sbjct 148160 TGAGCTATGAAAGC 148173 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 148305 TGCTTTCACTGAGAGTTGAACTCAGGACCTCCCGCTTACTAAACGGGTGCTCTGACCAAA 148364 Query 79684 TGAGCTACGAAAGC 79697 ||||||| |||||| Sbjct 148365 TGAGCTATGAAAGC 148378 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 148512 TGCTTTCACTGAGAGTTGAACTCAGGACCTCCCGCTTACTAAACGGGTGCTCTGACCAAA 148571 Query 79684 TGAGCTACGAAAGC 79697 ||||||| |||||| Sbjct 148572 TGAGCTATGAAAGC 148585 >seq43 Length=1658784 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 1260121 TGCTTTCACTGAGAGTTGAACTCAGGACCTCCCGCTTACTAAACGGGTGCTCTGACCAAA 1260180 Query 79684 TGAGCTACGAAAGC 79697 ||||||| |||||| Sbjct 1260181 TGAGCTATGAAAGC 1260194 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 1260336 TGCTTTCACTGAGAGTTGAACTCAGGACCTCCCGCTTACTAAACGGGTGCTCTGACCAAA 1260395 Query 79684 TGAGCTACGAAAGC 79697 ||||||| |||||| Sbjct 1260396 TGAGCTATGAAAGC 1260409 >seq10 Length=3149477 Score = 86.0 bits (94), Expect = 7e-12 Identities = 66/77 (86%), Gaps = 1/77 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 3018719 TGCTTTCACTGAGAGTTGAACTCAGGACCTCCCGCTTACTAAACGGGTGCTCTGACCAAC 3018778 Query 79684 TGAGCTACGAAAGCAAA 79700 ||||||| || |||||| Sbjct 3018779 TGAGCTATGAGAGCAAA 3018795 >seq29 Length=1968525 Score = 84.2 bits (92), Expect = 2e-11 Identities = 65/76 (86%), Gaps = 1/76 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTC-TACCAAT 79683 ||||||| |||| |||| |||| |||||||| ||||||||||||||||| || |||| Sbjct 1392305 TGCTTTCACTGAGAGTTGAACTCAGGACCTCCCGTTTACTAAACGGGTGCTCTTAACAAT 1392246 Query 79684 TGAGCTACGAAAGCAA 79699 ||||||| |||||||| Sbjct 1392245 TGAGCTATGAAAGCAA 1392230 >seq139 Length=338253 Score = 82.4 bits (90), Expect = 8e-11 Identities = 67/80 (84%), Gaps = 1/80 (1%) Strand=Plus/Minus Query 79622 GACTGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACC 79680 || ||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||| Sbjct 123479 GAATGCTTTCACTGAGAGTTGAACTCAGGACCTCCCGCTTACTAAACGGGTGCTCTGACC 123420 Query 79681 AATTGAGCTACGAAAGCAAA 79700 | ||||||| || |||||| Sbjct 123419 ATCTGAGCTATGAGAGCAAA 123400 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547210815128400