Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Selaginella_20moellendorffii_20[refseq_20GCF_5F000143415.3_202010- 07-06] 758 sequences; 212,501,708 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq45 86.0 6e-12 seq3 82.4 7e-11 >seq45 Length=1630749 Score = 86.0 bits (94), Expect = 6e-12 Identities = 102/137 (74%), Gaps = 1/137 (1%) Strand=Plus/Plus Query 34606 CCAATTCTACGTCGCGAATGGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACAT 34665 ||| ||||| || | ||||| ||||| || |||||| | |||||||| || | ||||| Sbjct 1276263 CCAGTTCTATGTTTCCAATGGCGAGCTCTCTTGCCAGATGTATCAACGCTCTTGTGACAT 1276322 Query 34666 GGGGTTAGGGGTGCCGTTCAACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCA 34725 ||| | || || || ||||||||||| ||||| ||| | || | ||||||||| || Sbjct 1276323 GGGACTCGGTGTTCCATTCAACATTGCGTCCTACGCACTGTTAACTTGCATGATCGCGCA 1276382 Query 34726 TGTCGTGGGGTTGGTTC 34742 ||| || ||| |||| Sbjct 1276383 CGTC-TGTGGTATGTTC 1276398 Score = 86.0 bits (94), Expect = 6e-12 Identities = 102/137 (74%), Gaps = 1/137 (1%) Strand=Plus/Minus Query 6603 GAACCAACCCCACGACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGA 6662 |||| ||| || ||| || ||||||||| | || | ||| ||||| |||||||||| Sbjct 1276398 GAACATACCACA-GACGTGCGCGATCATGCAAGTTAACAGTGCGTAGGACGCAATGTTGA 1276340 Query 6663 ACGGCACCCCTAACCCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCAT 6722 | || || || | |||||||| | || |||||||| | |||||| || ||||| |||| Sbjct 1276339 ATGGAACACCGAGTCCCATGTCACAAGAGCGTTGATACATCTGGCAAGAGAGCTCGCCAT 1276280 Query 6723 TCGCGACGTAGAATTGG 6739 | | || ||||| ||| Sbjct 1276279 TGGAAACATAGAACTGG 1276263 >seq3 Length=4463058 Score = 82.4 bits (90), Expect = 7e-11 Identities = 101/137 (74%), Gaps = 1/137 (1%) Strand=Plus/Plus Query 6603 GAACCAACCCCACGACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGA 6662 |||| ||| || ||| || ||||||||| | || | || ||||| |||||||||| Sbjct 3038979 GAACATACCACA-GACGTGCGCGATCATGCAAGTTAAGAGTGCGTAGGACGCAATGTTGA 3039037 Query 6663 ACGGCACCCCTAACCCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCAT 6722 | || || || | |||||||| | || |||||||| | |||||| || ||||| |||| Sbjct 3039038 ATGGAACACCGAGTCCCATGTCACAAGAGCGTTGATACATCTGGCAAGAGAGCTCGCCAT 3039097 Query 6723 TCGCGACGTAGAATTGG 6739 | | || ||||| ||| Sbjct 3039098 TGGAAACATAGAACTGG 3039114 Score = 82.4 bits (90), Expect = 7e-11 Identities = 101/137 (74%), Gaps = 1/137 (1%) Strand=Plus/Minus Query 34606 CCAATTCTACGTCGCGAATGGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACAT 34665 ||| ||||| || | ||||| ||||| || |||||| | |||||||| || | ||||| Sbjct 3039114 CCAGTTCTATGTTTCCAATGGCGAGCTCTCTTGCCAGATGTATCAACGCTCTTGTGACAT 3039055 Query 34666 GGGGTTAGGGGTGCCGTTCAACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCA 34725 ||| | || || || ||||||||||| ||||| || | || | ||||||||| || Sbjct 3039054 GGGACTCGGTGTTCCATTCAACATTGCGTCCTACGCACTCTTAACTTGCATGATCGCGCA 3038995 Query 34726 TGTCGTGGGGTTGGTTC 34742 ||| || ||| |||| Sbjct 3038994 CGTC-TGTGGTATGTTC 3038979 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448258152713760