Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Selaginella_20moellendorffii_20[refseq_20GCF_5F000143415.3_202010- 07-06] 758 sequences; 212,501,708 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq39 91.5 2e-13 seq64 86.0 9e-12 >seq39 Length=1751465 Score = 91.5 bits (100), Expect = 2e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 76274 GCTATAGATGCTAGATTACAAACGGCTACCTCATTAGCATTGGCATATTGTATTATCTCC 76333 || || ||||| || ||||| |||||| |||| | | ||| ||||| | ||||| Sbjct 1281651 GCAATGGATGCAAGGTTACACACGGCTGTCTCAGAGGGACTGGTATATTCCACAATCTCA 1281592 Query 76334 GTGCATAGATTACTACACTTGATAGTTCCAAGATTTTGTTGGTTGCTCTTTTTGTTACAT 76393 ||||| ||||| ||||||||||| || ||||||||||| |||||||| ||||||| Sbjct 1281591 GTGCAGAGATTTGAGCACTTGATAGTCCCCAGATTTTGTTGATTGCTCTTCCTGTTACAA 1281532 Query 76394 GAGTCCTTATAAAGAACAAA 76413 | |||| | | ||| ||| Sbjct 1281531 GTATCCTGAAACGGAAAAAA 1281512 >seq64 Length=1151164 Score = 86.0 bits (94), Expect = 9e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 76274 GCTATAGATGCTAGATTACAAACGGCTACCTCATTAGCATTGGCATATTGTATTATCTCC 76333 || || ||||| || ||||| |||||| |||| | | ||| ||||| | ||||| Sbjct 1111233 GCAATGGATGCAAGGTTACACACGGCTGTCTCAGAGGGACTGGTATATTCCACAATCTCA 1111174 Query 76334 GTGCATAGATTACTACACTTGATAGTTCCAAGATTTTGTTGGTTGCTCTTTTTGTTACAT 76393 ||||| ||||| ||||||||||| || ||||||||||| |||||||| |||| || Sbjct 1111173 GTGCAGAGATTTGAGCACTTGATAGTCCCCAGATTTTGTTGATTGCTCTTCCTGTTGCAA 1111114 Query 76394 GAGTCCTTATAAAGAACAAA 76413 | |||| | | ||| ||| Sbjct 1111113 GTATCCTGAAACGGAAAAAA 1111094 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712927644946560