Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Selaginella_20moellendorffii_20[refseq_20GCF_5F000143415.3_202010- 07-06] 758 sequences; 212,501,708 total letters Query= NC_031242.1 Length=174307 Score E Sequences producing significant alignments: (Bits) Value seq758 690 0.0 >seq758 Length=186484 Score = 690 bits (764), Expect = 0.0 Identities = 739/973 (76%), Gaps = 4/973 (0%) Strand=Plus/Plus Query 163949 ACCGACAATCGTTTGTATGTCGGTTGGTTCGGCGTCCTGATGATTCCCTGCCTGCTGGCA 164008 ||||| ||||| | || | || |||||||| || |||||||| || |||| | | Sbjct 93130 ACCGAAAATCGCCTTTACATTGGGTGGTTCGGTGTACTGATGATCCCGACCCTGTTAACT 93189 Query 164009 GCGACTACATGTTTCATCATCGCCTTCATCGGTGCTCCTCCTGTGGACATCGATGGCATC 164068 || || | ||||| | || || |||| ||||| || || || || || || || Sbjct 93190 GCAACCTCCGTATTCATTACTGCTTTTATCGCAGCTCCGCCAGTAGATATTGACGGTATT 93249 Query 164069 CGCGAACCCGTCGCTGGTTCGCTCATGTATGGAAACAACATCATCTCTGGTGCTGTTATC 164128 ||||| ||||| ||||||| || || || || ||||| || |||||||||||| ||||| Sbjct 93250 CGCGAGCCCGTTTCTGGTTCTCTTATATACGGGAACAATATAATCTCTGGTGCTATTATC 93309 Query 164129 CCTTCTTCTAACGCTATCGGTCTGCACTTCTACCCCATCTGGGAAGCAGCAAGTCTGGAC 164188 || | || |||||||||| |||||||||||||||| |||||||| ||| | | || Sbjct 93310 CCCACCTCCGCCGCTATCGGTTTGCACTTCTACCCCATTTGGGAAGCGGCATCTATTGAT 93369 Query 164189 GAATGGCTCTACAACGGTGGTCCTTTCCAACTCGTTGTGTTCCACTTCCTGATTG--GCA 164246 |||||||| |||||||| ||||| | | |||| | || | ||||||||| ||| | | Sbjct 93370 GAATGGCTATACAACGGCGGTCCCTACGAACTAATCGTTCTTCACTTCCTGCTTGGAGTA 93429 Query 164247 TCTATGCTTACATGGGTCGTGAGTGGGAACTTTCTTACCGTCTTGGTATGCGTCCTTGGA 164306 || ||| |||||||||||||||||||||||| | ||| | |||||||| ||||||| Sbjct 93430 GCT-TGC-TACATGGGTCGTGAGTGGGAACTTAGCTTCCGCTTGGGTATGCGCCCTTGGA 93487 Query 164307 TTTGCGTAGCATACTCTGCTCCTGTCGCTGCAGCGAGTGCAGTGTTCCTGGTCTATCCTT 164366 | || || ||||| || ||||| || || || | || || || || |||| ||| Sbjct 93488 TCGCTGTTGCGTACTCAGCCCCTGTTGCAGCCGCCACCGCCGTTTTTTTGATCTACCCTA 93547 Query 164367 TCGGTCAAGGTTCTTTCTCTGATGCAATGCCTCTGGGCATCTCTGGAACCTTCAACTACA 164426 | |||||||| ||||| || | |||||| | || |||||||| |||||||||| | Sbjct 93548 TTGGTCAAGGAAGCTTCTCCGACGGTATGCCTTTAGGAATCTCTGGCACCTTCAACTTTA 93607 Query 164427 TGTTGGTCTTCCAGGCTGAGCACAACATCCTCATGCACCCCTTCCATATGCTCGGCGTAG 164486 || | || ||||| ||||| ||||||||||| ||||| || ||||| ||| | || || | Sbjct 93608 TGATCGTGTTCCAAGCTGAACACAACATCCTTATGCATCCGTTCCACATGTTGGGTGTGG 93667 Query 164487 CAGGTGTGTTTGGCGGTTCTCTGTTCAGTGCAATGCACGGTTCGCTGGTTACTTCTTCGC 164546 | || || || ||||| ||||| |||||||| ||||| ||||| |||| |||||| | Sbjct 93668 CTGGCGTATTCGGCGGATCTCTATTCAGTGCTATGCATGGTTCCTTGGTAACTTCTAGCC 93727 Query 164547 TGGTTCGTGAGACCACCGAAAATGAGTCCCAGAACTATGGTTACAAGTTTGGTCAGGAAG 164606 || | || || ||||| || ||||| ||| ||| ||||||| |||||||||||||| Sbjct 93728 TGATCCGGGAAACCACTGAGAATGAATCCGCTAACGCGGGTTACAGGTTTGGTCAGGAAG 93787 Query 164607 AAGAAACCTACAACATCGTTGCCGCTCACGGTTACTTTGGTCGTCTGATTTTCCAATACG 164666 | ||||| || ||||| || || |||||||||||||| ||||| |||| |||||||| | Sbjct 93788 AGGAAACATATAACATTGTAGCTGCTCACGGTTACTTCGGTCGATTGATCTTCCAATATG 93847 Query 164667 CTTCCTTCAACAACTCCCGTTCGCTGCACTTCTTCCTCGCAGCATGGCCTGTTGTCGGTA 164726 || ||| || ||||||||||| || ||||| ||| | || || ||||| || || |||| Sbjct 93848 CTAGCTTTAATAACTCCCGTTCCCTACACTTTTTCTTGGCTGCTTGGCCAGTAGTAGGTA 93907 Query 164727 TCTGGTTTACTGCTCTGGGCGTTAGCACCATGGCATTCAACCTCAACGGTTTCAACTTCA 164786 |||||||||| ||| ||||| | ||||| ||||| |||||||| |||||||||||||| | Sbjct 93908 TCTGGTTTACCGCTTTGGGCATAAGCACAATGGCTTTCAACCTAAACGGTTTCAACTTTA 93967 Query 164787 ACCAGTCCATCATCGATGGTCAGGGTCGTGTGCTCAACACCTGGGCAGACGTTCTCAACC 164846 |||| ||| | | ||| | ||||| ||||| | ||||| ||||| ||| || |||||| Sbjct 93968 ACCAATCCGTAGTTGATAGCCAGGGACGTGTCATAAACACATGGGCCGACATTATCAACC 94027 Query 164847 GTGCTGGTCTGGGCATGGAAGTGATGCACGAGCGTAATGCTCACAACTTCCCTCTCGACC 164906 | || || || ||||| || ||||| || ||||| ||||||||||||||||| || | Sbjct 94028 GCGCCAACCTTGGTATGGAGGTTATGCATGAACGTAACGCTCACAACTTCCCTCTAGATC 94087 Query 164907 TTGCTGCTGCTGA 164919 | ||| | | ||| Sbjct 94088 TGGCTTCCGTTGA 94100 Score = 273 bits (302), Expect = 2e-68 Identities = 658/991 (66%), Gaps = 6/991 (1%) Strand=Plus/Plus Query 165180 AGAGACCGTTTCGTTTTTGTTGGCTGGTCTGGACTTCTTCTTTTTCCCACTGCTTATCTT 165239 ||||||||||| | || || || ||||||| || ||| |||| ||| ||| | Sbjct 33923 AGAGACCGTTTTGCATTCGTGGGTCGGTCTGGTCTATCGCTTCTTCCTCGTGCCTATTTC 33982 Query 165240 GCTCTTGGGGGTTGGCTTACTGGGACTACTTTCGTCACGAGTTGGTATACTCACGGACTT 165299 ||| || |||||| | || || || |||| ||||| |||| ||||||||| | Sbjct 33983 TCTCCCGGCGGTTGGTTCACGGGTACAACTTCTGTCACCTCACGGTACACTCACGGATTG 34042 Query 165300 GCGAGTTCCTATCTTGAGGGTGCAAACTTTCTTACTGCGGCAGTTTCTACTCCAGCAGAC 165359 || |||||||||| |||||| |||| |||||| | || | || || || || || Sbjct 34043 GCTAGTTCCTATCCGGAGGGTCGCAACTCTCTTACCGTCGCTGCATCCACCCCCGCCAAC 34102 Query 165360 GCTATGGGTCATTCTCTTCTGCTTCTATGGGGTCCTGAGTCTCAAGGGGACTTCATCCGC 165419 | ||||| | | | | || |||||||| ||| | ||||| || |||| ||| Sbjct 34103 AGCCCAGCACATTCCCCGCCGTTGCTTTGGGGTCCCGAGGCGCAAGGAGATTTCACCCGT 34162 Query 165420 TGGTGCCAACTTGGGGGACTCTGGACTTTTGTGGCGCTCCACGGAGCCTTTGCACTTATA 165479 ||||||||| | || || || ||||| || || || ||||| || || |||| | || Sbjct 34163 TGGTGCCAATTAGGTGGTCTATGGACCTTCGTCGCCCTCCATGGTGCTTTTGGTTTGATG 34222 Query 165480 GGTTTCATGCTTCGCCAGTTTGAACTGGCACGACTTATCGGTAT-TCGTCCTTACAATGC 165538 ||| ||| | ||||| | ||||| || ||| | | | || ||||| || || || Sbjct 34223 GGTCCTATGTTGCGCCAATCCGAACTCGCTCGATCTGT-GCAATCGCGTCCGTATAACGC 34281 Query 165539 TATTGCTTTCTCTGGTCCTATTGCTGTATTCGTTAGTGTTTTTCTTATGTATCCTCTGGG 165598 || || || || | ||| || || || | ||| || | | || |||| |||| Sbjct 34282 AATCGCGTTTTCCGCTCCCATCGCCGTTTCTGTTCCCGTATCCTTGATCCATCCGTTGGG 34341 Query 165599 ACAATC--GTCCTGGTTCTTCGCACCGTCGTTCGGGGTCGCAGCAATCTTCCGATTCCTG 165656 || || ||| |||| | |||||| | ||| || ||||| |||||||||| | | Sbjct 34342 CCAGTCCGGTC--GGTTTTCCGCACCCAGCTCCGGTGTAGCAGCCATCTTCCGATCCATC 34399 Query 165657 CTCTTCCTCCAAGGGTTCCATAACTGGACGCTGAATCCCTTTCACATGATGGGCGTAGCA 165716 ||| ||| || || ||||||| ||||| || || || ||||| |||||||| || || Sbjct 34400 CTCCTCCCTCAGGGTCTCCATAATTGGACCCTCAACCCGTTTCATATGATGGGAGTTGCT 34459 Query 165717 GGTATCTTAGGCGGAGCATTGCTTTCTGCCATTCATGGTGTTACAGTAGAGAATACTTTG 165776 || | || | || | ||| | ||| || | || || |||||||| || Sbjct 34460 GGAGTACCGGGTGCTGCTCCCCCACGTGCTACTCACGGCGCAACCGTGGAGAATACACTG 34519 Query 165777 TATGAAGATGGTGAACAAGCAAACACTTTCAAAGCATTTGATAGTACTCAGGAAGAGGAA 165836 | || |||||||| || || || ||| || | || || || || || Sbjct 34520 TTCGAGGATGGTGATGGCGCGAATACATTCCGCGCCTCCAATCCGACCCAATCTGAAGAG 34579 Query 165837 ACTTATTCCATGGTCACTGCTAACCGTTTCTGGTCTCAGATTTTTGGTATTGCTTTCAGC 165896 |||||||||||||| |||||||| || || ||||| || | | ||| |||| | | Sbjct 34580 ACTTATTCCATGGTTACTGCTAATCGCTTTTGGTCCCAAACATCCGGTGTTGCCCCCCCC 34639 Query 165897 AATAAGCGTTGGCTTCACTTCTTTATGCTCTTTGTTCCTGTCATGGGACTTTGGACAAGT 165956 || || ||| || |||||| ||| | || || || |||| || ||| ||| Sbjct 34640 AACAAACGTCGGTCACACTTCCCCATGTTATTCGTACCCGTCACTGGTTCACGGATGAGT 34699 Query 165957 TCTATTGGTATCATTGGTCTCGCACTCAATCTTCGTGCTTATGATTTTGTGTCTCAGGAG 166016 ||||||| | ||||||| || | ||||| || || ||||| || || || |||||| Sbjct 34700 GCTATTGGAGTAGTTGGTCTAGCCCCGAATCTGCGGGCGTATGACTTCGTCTCCCAGGAG 34759 Query 166017 ATTAGAGCTGCTGAGGATCCAGAGTTTGAAACGTTCTATACGAAAAACATCCTCCTTAAT 166076 | | || || || ||||| ||||| ||||| || || || || || || ||| Sbjct 34760 GTGCGCGCAGCAGAAGATCCCGAGTTCGAAACTCCTTACACAAAGAATATTCTGTCGAAT 34819 Query 166077 GAAGGACTCCGTGCCTGGTTGGCTCCTGTAGACCAACCTCATGAGAACTTTGTGTTCCCT 166136 || || | ||||| ||| |||| || || || |||||||| ||| | || ||||| Sbjct 34820 GAGGGTATTCGTGCTTGGATGGCAGCTCAGGATCAGCCTCATGAAAACCTCGTATTCCCC 34879 Query 166137 GAAGAAGTCTTGCCAAGAGGCAACGCACTTT 166167 || || || | || | || ||||| |||| Sbjct 34880 GAGGAGGTTCTACCCCGTGGAAACGCTCTTT 34910 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 557649116224560