Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Selaginella_20moellendorffii_20[refseq_20GCF_5F000143415.3_202010- 07-06] 758 sequences; 212,501,708 total letters Query= NC_031935.1 Length=186386 Score E Sequences producing significant alignments: (Bits) Value seq758 670 0.0 seq37 84.2 3e-11 >seq758 Length=186484 Score = 670 bits (742), Expect = 0.0 Identities = 756/1001 (76%), Gaps = 16/1001 (2%) Strand=Plus/Plus Query 177598 TTCTGTAACTGGGTAACCTCCACCAACAATCGTCTGTATGTCGGTTGGTTCGGTGTCCTG 177657 ||||| | ||| | ||| |||| | ||||| || || | || ||||||||||| ||| Sbjct 93109 TTCTGCGATTGGATCACCAGCACCGAAAATCGCCTTTACATTGGGTGGTTCGGTGTACTG 93168 Query 177658 ATGATCCCTACGCTGCTCGCTGCTGCTATCTGT-TTCATCGTCGCTTTCGTCGCTGCTCC 177716 |||||||| || ||| | |||| | || || ||||| ||||| |||| ||||| Sbjct 93169 ATGATCCCGACCCTGTTAACTGCAAC-CTCCGTATTCATTACTGCTTTTATCGCAGCTCC 93227 Query 177717 TCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCCCTGATGTATGGCAACAA 177776 || || || || ||||| || || || ||||| ||||||| || || || || ||||| Sbjct 93228 GCCAGTAGATATTGACGGTATTCGCGAGCCCGTTTCTGGTTCTCTTATATACGGGAACAA 93287 Query 177777 CATCATTTCTGGTGCTGTTGTTCCTTCTTCTAACGCTATTGGTCTCCACTTCTATCCCAT 177836 || || ||||||||| || | || | || |||||| ||| | |||||||| ||||| Sbjct 93288 TATAATCTCTGGTGCTATTATCCCCACCTCCGCCGCTATCGGTTTGCACTTCTACCCCAT 93347 Query 177837 CTGGGAAGCAGCTTCTCTCGATGAGTGGCTCTACAATGGTGGTCCTTTCCAAC---TCGT 177893 |||||||| || ||| | ||||| ||||| ||||| || ||||| | | ||| |||| Sbjct 93348 TTGGGAAGCGGCATCTATTGATGAATGGCTATACAACGGCGGTCCCTACGAACTAATCGT 93407 Query 177894 TATCTTCCACTTCCTGATCG--GTATCTATGCATACATGGGTCGTGAGTGGGAACTTTCT 177951 |||| ||||||||| | | ||| || ||| |||||||||||||||||||||||| Sbjct 93408 --TCTT-CACTTCCTGCTTGGAGTAGCT-TGC-TACATGGGTCGTGAGTGGGAACTTAGC 93462 Query 177952 TACCGCCTAGGTATGCGTCCCTGGATCTGTGTAGCATACTCTGCTCCAGTCGCCGCAGCA 178011 | |||| | |||||||| || |||||| ||| || ||||| || || || || || || Sbjct 93463 TTCCGCTTGGGTATGCGCCCTTGGATCGCTGTTGCGTACTCAGCCCCTGTTGCAGCCGCC 93522 Query 178012 TCTGCTGTATTCCTTGTTTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCTATGCCCCTG 178071 | || || || | | || ||| | |||||||| ||||| |||| |||||| | Sbjct 93523 ACCGCCGTTTTTTTGATCTACCCTATTGGTCAAGGAAGCTTCTCCGACGGTATGCCTTTA 93582 Query 178072 GGTATCAGTGGCACCTTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATCCTGATG 178131 || ||| |||||||||||||| ||| | || |||||||| || ||||||||||| ||| Sbjct 93583 GGAATCTCTGGCACCTTCAACTTTATGATCGTGTTCCAAGCTGAACACAACATCCTTATG 93642 Query 178132 CACCCCTTCCACATGTTGGGCGTCGCTGGTGTCTTTGGTGGTTCTCTGTTCAGTGCGATG 178191 || || |||||||||||||| || ||||| || || || || ||||| |||||||| ||| Sbjct 93643 CATCCGTTCCACATGTTGGGTGTGGCTGGCGTATTCGGCGGATCTCTATTCAGTGCTATG 93702 Query 178192 CACGGTTCTCTGGTTACTTCCTCGCTGGTTCGTGAAACCACCGAGAACGAAAGTCAG--A 178249 || ||||| |||| ||||| ||| | || |||||||| ||||| ||| || | | Sbjct 93703 CATGGTTCCTTGGTAACTTCTAGCCTGATCCGGGAAACCACTGAGAATGAA--TCCGCTA 93760 Query 178250 ACTATGGTTACAAGTTCGGTCAAGAAGAAGAGACCTACAACATCGTTGCTGCTCATGGTT 178309 || ||||||| ||| ||||| ||||| || || || ||||| || |||||||| |||| Sbjct 93761 ACGCGGGTTACAGGTTTGGTCAGGAAGAGGAAACATATAACATTGTAGCTGCTCACGGTT 93820 Query 178310 ACTTCGGTCGCCTGATCTTCCAATACGCATCCTTCAACAACTCCCGTTCGCTGCACTTCT 178369 |||||||||| ||||||||||||| || ||| || ||||||||||| || ||||| | Sbjct 93821 ACTTCGGTCGATTGATCTTCCAATATGCTAGCTTTAATAACTCCCGTTCCCTACACTTTT 93880 Query 178370 TCCTCGCAGCATGGCCTGTTGTCGGTATCTGGTTCACTGCTCTTGGTGTTAGCACCATGG 178429 || | || || ||||| || || ||||||||||| || ||| | || | ||||| |||| Sbjct 93881 TCTTGGCTGCTTGGCCAGTAGTAGGTATCTGGTTTACCGCTTTGGGCATAAGCACAATGG 93940 Query 178430 CATTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCATGGATAGTCAGGGCAAAGTCC 178489 | |||||||| |||||||||||||| ||||| ||| | | ||||| ||||| ||| Sbjct 93941 CTTTCAACCTAAACGGTTTCAACTTTAACCAATCCGTAGTTGATAGCCAGGGACGTGTCA 94000 Query 178490 TGAACACCTGGGCAGACGTTCTCAACCGTGCTGGTCTTGGTATGGAAGTCATGCACGAGC 178549 | ||||| ||||| ||| || ||||||| || ||||||||||| || ||||| || | Sbjct 94001 TAAACACATGGGCCGACATTATCAACCGCGCCAACCTTGGTATGGAGGTTATGCATGAAC 94060 Query 178550 GTAATGCTCACAACTTCCCTCTTGACCTCGCTGCTGCTGAA 178590 |||| ||||||||||||||||| || || ||| | | |||| Sbjct 94061 GTAACGCTCACAACTTCCCTCTAGATCTGGCTTCCGTTGAA 94101 Score = 329 bits (364), Expect = 4e-85 Identities = 681/1008 (68%), Gaps = 4/1008 (0%) Strand=Plus/Plus Query 178851 GATGACTGGCTTAAGCGTGATCGGTTCGTTTTTGTTGGTTGGTCAGGTCTTCTTCTGTTC 178910 |||||| ||| | | | || || || | || || ||| |||| ||||| || | Sbjct 33908 GATGACCGGCCAAGGAGAGACCGTTTTGCATTCGTGGGTCGGTCTGGTCTATCGCTTCTT 33967 Query 178911 CCTACTGCTTACATGGCACTGGGCGGTTGGCTCACGGGCACAACATTCGTCACCTCGTGG 178970 ||| ||| || | | | ||||||||| ||||||| ||||| | |||||||| || Sbjct 33968 CCTCGTGCCTATTTCTCTCCCGGCGGTTGGTTCACGGGTACAACTTCTGTCACCTCACGG 34027 Query 178971 TATACTCACGGGATTGCTTCTTCGTATCTTGAGGGATGTAATTTCCTTACTGCTGCTGTA 179030 || |||||||| | ||| ||| |||| ||||| | || | ||||| | |||| | Sbjct 34028 TACACTCACGGATTGGCTAGTTCCTATCCGGAGGGTCGCAACTCTCTTACCGTCGCTGCA 34087 Query 179031 TCAACTCCTGCTGACGCTCTCGGACATTCCCTACTTCTTCTATGGGGTCCAGAAGCTCAG 179090 || || || || || | | |||||||| | | || |||||||| || || || Sbjct 34088 TCCACCCCCGCCAACAGCCCAGCACATTCCCCGCCGTTGCTTTGGGGTCCCGAGGCGCAA 34147 Query 179091 GGAGATTTCGTCCGCTGGCTCCAACTTGGGGGACTATGGCCTTTTGTGGCGCTCCACGGT 179150 ||||||||| ||| ||| |||| | || || |||||| | || || || ||||| ||| Sbjct 34148 GGAGATTTCACCCGTTGGTGCCAATTAGGTGGTCTATGGACCTTCGTCGCCCTCCATGGT 34207 Query 179151 GCCTTCGCTCTCATAGGTTTCATGCTTCGGCAGTTTGAAATCGCACG-TCTAGTCGGTAT 179209 || || | | | || ||| ||| | || || | ||| |||| || ||| || | || Sbjct 34208 GCTTTTGGTTTGATGGGTCCTATGTTGCGCCAATCCGAACTCGCTCGATCT-GT-GCAAT 34265 Query 179210 T-CGTCCTTACAATGCAATCGCGTTTTCTGGTCCAATTGCTGTCTTTGTGTCTGTTTTTC 179268 ||||| || || |||||||||||||| | ||| || || || | ||| | || | Sbjct 34266 CGCGTCCGTATAACGCAATCGCGTTTTCCGCTCCCATCGCCGTTTCTGTTCCCGTATCCT 34325 Query 179269 TCATGTATCCTCTCGGACAGTCCTCGTGGTTCTTTGCGCCGTCGTTTGGAGTTGCAGCGA 179328 | || |||| | || |||||| |||| | || || | || || ||||| | Sbjct 34326 TGATCCATCCGTTGGGCCAGTCCGGTCGGTTTTCCGCACCCAGCTCCGGTGTAGCAGCCA 34385 Query 179329 TTTTCCGCTTCCTACTCTTCCTACAGGGCTTCCACAACTGGACGCTCAACCCGTTCCACA 179388 | ||||| | | | ||| ||| ||||| |||| || ||||| ||||||||||| || | Sbjct 34386 TCTTCCGATCCATCCTCCTCCCTCAGGGTCTCCATAATTGGACCCTCAACCCGTTTCATA 34445 Query 179389 TGATGGGTGTAGCAGGTATCCTGGGCGGAGCATTGCTTTGTGCCATTCATGGTGCTACAG 179448 ||||||| || || || | | ||| | || | |||| | ||| || || || | Sbjct 34446 TGATGGGAGTTGCTGGAGTACCGGGTGCTGCTCCCCCACGTGCTACTCACGGCGCAACCG 34505 Query 179449 TAGAGAACACACTCTTTGAAGACAGTGACCAATCAAATACATTCAAGGCATTCGAGCCTA 179508 | ||||| ||||| || || || |||| | ||||||||| || | | | || | Sbjct 34506 TGGAGAATACACTGTTCGAGGATGGTGATGGCGCGAATACATTCCGCGCCTCCAATCCGA 34565 Query 179509 CACAAGAAGAGGAGACCTATTCGATGGTTACTGCCAACCGTTTCTGGTCTCAGATCTTTG 179568 | ||| || ||||| ||||| ||||||||||| || || || ||||| || | | | Sbjct 34566 CCCAATCTGAAGAGACTTATTCCATGGTTACTGCTAATCGCTTTTGGTCCCAAACATCCG 34625 Query 179569 GTATCGCCTTCAGCAATAAGCGTTGGCTACATTTCTTTATGTTGTTTGTTCCTGTCATGG 179628 || | ||| | ||| || ||| || ||| ||| ||||| || || || |||| | Sbjct 34626 GTGTTGCCCCCCCCAACAAACGTCGGTCACACTTCCCCATGTTATTCGTACCCGTCACTG 34685 Query 179629 GTCTTTGGACCTCTAGCATTGGTATTATTGGTCTTGCACTTAACCTTAGAGCTTATGACT 179688 || ||| | ||||| | ||||||| || | || || | || ||||||| Sbjct 34686 GTTCACGGATGAGTGCTATTGGAGTAGTTGGTCTAGCCCCGAATCTGCGGGCGTATGACT 34745 Query 179689 TTGTTTCACAAGAGATCAGAGCGGCAGAGGATCCTGAGTTCGAGACGTTCTATACCAAGA 179748 | || || || ||| | | || ||||| ||||| |||||||| || || || |||| Sbjct 34746 TCGTCTCCCAGGAGGTGCGCGCAGCAGAAGATCCCGAGTTCGAAACTCCTTACACAAAGA 34805 Query 179749 ACATCCTATTGAATGAAGGTCTACGTGCTTGGATGGCACCAGTCGATCAACCACATGAAA 179808 | || || | |||||| ||| | ||||||||||||||| | ||||| || ||||||| Sbjct 34806 ATATTCTGTCGAATGAGGGTATTCGTGCTTGGATGGCAGCTCAGGATCAGCCTCATGAAA 34865 Query 179809 ACTTTGTATTTCCTGAAGAAGTATTGCCAAGAGGCAACGCTCTGTGAT 179856 || | ||||| || || || || | || | || |||||||| |||| Sbjct 34866 ACCTCGTATTCCCCGAGGAGGTTCTACCCCGTGGAAACGCTCTTTGAT 34913 >seq37 Length=1749879 Score = 84.2 bits (92), Expect = 3e-11 Identities = 147/214 (69%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 176176 TTCTGGATGCTGCTGAGGAAGCAGGAGTTGAACTCAACTACTCGTGCCGCGCTGGTGCCT 176235 |||||||||| || ||||| || || | || | ||||||||||||||| || || | Sbjct 170872 TTCTGGATGCCGCGGAGGAGGCCGGGATCGACGTGCCCTACTCGTGCCGCGCCGGCGCAT 170931 Query 176236 GTTCGAGTTGTGCAGGAAAACTCATCTCGGGCACGGTAGATCAAAGCGATCAATCGTTCC 176295 | | || || | || || || |||| ||||| || || || ||| |||||||| Sbjct 170932 GCTGCAGCTGCGTGGGCAAGATCGTCTCCGGCACTGTGGACCAGTCGGATGGATCGTTCC 170991 Query 176296 TTGATGATGACCAGATCGATGCAGGTTTCATTCTGACTTGTGTTTCATATCCTACGAGCG 176355 | || || || |||| | | || | | |||| ||||| || |||| || || |||| Sbjct 170992 TGGACGACGATCAGAAGGCCGGGGGCTACGTTCTCACTTGCGTGGCATACCCGACCAGCG 171051 Query 176356 ATTGTGTGATTGAGACTGAGAAAGAAGAGGAACT 176389 || ||||| ||||| | || || || || || Sbjct 171052 ATGTGGTGATCGAGACGCACAAGGAGGACGAGCT 171085 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596301549989280