Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Selaginella_20moellendorffii_20[refseq_20GCF_5F000143415.3_202010- 07-06] 758 sequences; 212,501,708 total letters Query= NC_031944.1 Length=185102 Score E Sequences producing significant alignments: (Bits) Value seq758 700 0.0 seq8 93.3 5e-14 seq37 87.8 2e-12 seq141 86.0 7e-12 seq169 82.4 9e-11 >seq758 Length=186484 Score = 700 bits (776), Expect = 0.0 Identities = 754/994 (76%), Gaps = 4/994 (0%) Strand=Plus/Plus Query 169352 TTCTGTAACTGGGTAACCTCCACTGACAACCGTCTGTATGTCGGTTGGTTCGGCGTCCTG 169411 ||||| | ||| | ||| ||| || || || || || | || |||||||| || ||| Sbjct 93109 TTCTGCGATTGGATCACCAGCACCGAAAATCGCCTTTACATTGGGTGGTTCGGTGTACTG 93168 Query 169412 ATGATCCCCTGCCTGCTGGCAGCAACCACTTGTTTCATCATCGCCTTCATCGGTGCTCCC 169471 |||||||| |||| | | |||||| | ||||| | || || |||| ||||| Sbjct 93169 ATGATCCCGACCCTGTTAACTGCAACCTCCGTATTCATTACTGCTTTTATCGCAGCTCCG 93228 Query 169472 CCTGTGGACATCGACGGCATCCGCGAACCCGTTGCTGGTTCTCTGATGTATGGTAACAAC 169531 || || || || ||||| || ||||| |||||| |||||||||| || || || ||||| Sbjct 93229 CCAGTAGATATTGACGGTATTCGCGAGCCCGTTTCTGGTTCTCTTATATACGGGAACAAT 93288 Query 169532 ATCATCTCTGGTGCTGTTGTGCCCTCTTCCAACGCAATCGGTCTTCACTTCTATCCCATC 169591 || |||||||||||| || | ||| | ||| ||| |||||| | |||||||| ||||| Sbjct 93289 ATAATCTCTGGTGCTATTATCCCCACCTCCGCCGCTATCGGTTTGCACTTCTACCCCATT 93348 Query 169592 TGGGAAGCAGCAAGTCTCGATGAATGGTTGTACAACGGTGGTCCTTTCCAACTGGTTGTC 169651 |||||||| ||| | | ||||||||| | |||||||| ||||| | | |||| | || Sbjct 93349 TGGGAAGCGGCATCTATTGATGAATGGCTATACAACGGCGGTCCCTACGAACTAATCGTT 93408 Query 169652 TTCCACTTCCTCATCGGCAT--CTATGCTTACATGGGTCGTGAGTGGGAATTGTCCTATC 169709 | |||||||| | || | || |||| |||||||||||||||||||| | || | Sbjct 93409 CTTCACTTCCTGCTTGGAGTAGCT-TGCT-ACATGGGTCGTGAGTGGGAACTTAGCTTCC 93466 Query 169710 GTCTGGGTATGCGCCCTTGGATCTGTGTTGCTTACTCTGCTCCCGTTGCGGCAGCCTCCG 169769 | |||||||||||||||||||| |||||| ||||| || || ||||| || ||| ||| Sbjct 93467 GCTTGGGTATGCGCCCTTGGATCGCTGTTGCGTACTCAGCCCCTGTTGCAGCCGCCACCG 93526 Query 169770 CTGTTTTCCTGGTCTACCCGTTTGGGCAAGGGTCGTTCTCTGACGCTATGCCTCTGGGTA 169829 | ||||| || ||||||| |||| ||||| ||||| |||| ||||||| | || | Sbjct 93527 CCGTTTTTTTGATCTACCCTATTGGTCAAGGAAGCTTCTCCGACGGTATGCCTTTAGGAA 93586 Query 169830 TCTCGGGAACCTTTAACTACATGCTGGTCTTCCAAGCTGAGCACAACATCCTCATGCACC 169889 |||| || ||||| |||| ||| | || ||||||||||| ||||||||||| ||||| | Sbjct 93587 TCTCTGGCACCTTCAACTTTATGATCGTGTTCCAAGCTGAACACAACATCCTTATGCATC 93646 Query 169890 CCTTCCACATGCTTGGTGTTGCGGGAGTGTTTGGTGGGTCTCTGTTTAGCGCGATGCACG 169949 | ||||||||| | ||||| || || || || || || ||||| || || || ||||| | Sbjct 93647 CGTTCCACATGTTGGGTGTGGCTGGCGTATTCGGCGGATCTCTATTCAGTGCTATGCATG 93706 Query 169950 GTAGCCTCGTCACTTCGAGTCTTGTCCGTGAAACCACCGAGAACGAGTCCCAGAACTATG 170009 || | | || ||||| || || |||| |||||||| ||||| || ||| ||| | Sbjct 93707 GTTCCTTGGTAACTTCTAGCCTGATCCGGGAAACCACTGAGAATGAATCCGCTAACGCGG 93766 Query 170010 GTTACAAGTTCGGTCAAGAAGAAGAGACCTACAACATCGTTGCCGCTCACGGTTACTTCG 170069 |||||| ||| ||||| ||||| || || || ||||| || || |||||||||||||||| Sbjct 93767 GTTACAGGTTTGGTCAGGAAGAGGAAACATATAACATTGTAGCTGCTCACGGTTACTTCG 93826 Query 170070 GTCGCCTGATCTTCCAATACGCTTCCTTCAACAACTCCCGTTCACTGCACTTCTTCCTCG 170129 |||| ||||||||||||| ||| ||| || ||||||||||| || ||||| ||| | | Sbjct 93827 GTCGATTGATCTTCCAATATGCTAGCTTTAATAACTCCCGTTCCCTACACTTTTTCTTGG 93886 Query 170130 CAGCATGGCCTGTTGTTGGCATCTGGTTCACCGCTCTTGGTGTCTCCACGATGGCGTTCA 170189 | || ||||| || || || |||||||| |||||| | || | ||| ||||| |||| Sbjct 93887 CTGCTTGGCCAGTAGTAGGTATCTGGTTTACCGCTTTGGGCATAAGCACAATGGCTTTCA 93946 Query 170190 ACCTGAACGGTTTCAACTTCAACCAGTCCATCATCGATGGTCAGGGTCGTGTGCTCAACA 170249 |||| |||||||||||||| ||||| ||| | | ||| | ||||| ||||| | |||| Sbjct 93947 ACCTAAACGGTTTCAACTTTAACCAATCCGTAGTTGATAGCCAGGGACGTGTCATAAACA 94006 Query 170250 CCTGGGCAGACGTTCTCAACCGTGCTGGTCTTGGCATGGAAGTGATGCACGAGCGTAATG 170309 | ||||| ||| || ||||||| || ||||| ||||| || ||||| || ||||| | Sbjct 94007 CATGGGCCGACATTATCAACCGCGCCAACCTTGGTATGGAGGTTATGCATGAACGTAACG 94066 Query 170310 CTCACAACTTCCCTCTCGACCTCGCTGCTGCTGA 170343 |||||||||||||||| || || ||| | | ||| Sbjct 94067 CTCACAACTTCCCTCTAGATCTGGCTTCCGTTGA 94100 Score = 322 bits (356), Expect = 6e-83 Identities = 680/1009 (67%), Gaps = 4/1009 (0%) Strand=Plus/Plus Query 170606 GGATGACTGGCTTAAACGTGATCGGTTTGTATTTGTGGGCTGGTCTGGACTTCTTCTTTT 170665 ||||||| ||| | | || || |||| ||| ||||| ||||||| || ||| | Sbjct 33907 GGATGACCGGCCAAGGAGAGACCGTTTTGCATTCGTGGGTCGGTCTGGTCTATCGCTTCT 33966 Query 170666 TCCCACTGCTTATCTTGCAATTGGCGGCTGGCTTACGGGCACGACATTTGTTACAAGTTG 170725 ||| ||| ||| | | ||||| ||| | ||||| || || | ||| || | Sbjct 33967 TCCTCGTGCCTATTTCTCTCCCGGCGGTTGGTTCACGGGTACAACTTCTGTCACCTCACG 34026 Query 170726 GTACACCCACGGACTTGCAAGTTCGTACCTTGAAGGTGCTAATTTCCTTACAGCGGCTGT 170785 |||||| |||||| | || ||||| || | || ||| || | ||||| | |||| Sbjct 34027 GTACACTCACGGATTGGCTAGTTCCTATCCGGAGGGTCGCAACTCTCTTACCGTCGCTGC 34086 Query 170786 GTCAACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCA 170845 || || || || | | ||||| | | | ||||||||||| ||| | || Sbjct 34087 ATCCACCCCCGCCAACAGCCCAGCACATTCCCCGCCGTTGCTTTGGGGTCCCGAGGCGCA 34146 Query 170846 GGGGGATTTCCAACGCTGGTTACAACTTGGGGGACTCTGGAATTTTGTGGCGCTCCACGG 170905 || |||||| || |||| ||| | || || || |||| || || || ||||| || Sbjct 34147 AGGAGATTTCACCCGTTGGTGCCAATTAGGTGGTCTATGGACCTTCGTCGCCCTCCATGG 34206 Query 170906 AGCCTTTGCTCTCATAGGTTTCATGCTTCGGCAGTTTGAAATCAGTCG-TCTCGTAGGGA 170964 || |||| | | || ||| ||| | || || | ||| || ||| ||| || | | Sbjct 34207 TGCTTTTGGTTTGATGGGTCCTATGTTGCGCCAATCCGAACTCGCTCGATCT-GT-GCAA 34264 Query 170965 TTA-GACCGTACAATGCAATCGCTTTCTCTGGTCCTATCGCTGTGTTTGTCAGCGTGTTC 171023 | | ||||| || |||||||| || || | ||| ||||| || | ||| ||| | | Sbjct 34265 TCGCGTCCGTATAACGCAATCGCGTTTTCCGCTCCCATCGCCGTTTCTGTTCCCGTATCC 34324 Query 171024 CTCATCTATCCTCTTGGGCAGTCAAGTTGGTTCTTCGCACCTTCCTTTGGAGTTGCAGCA 171083 | ||| |||| | || ||||| || |||| | |||||| || || || ||||| Sbjct 34325 TTGATCCATCCGTTGGGCCAGTCCGGTCGGTTTTCCGCACCCAGCTCCGGTGTAGCAGCC 34384 Query 171084 ATCTTCCGCTTCCTGCTCTTCCTGCAAGGTTTCCACAACTGGACACTGAATCCATTTCAT 171143 |||||||| | | | ||| ||| || ||| |||| || ||||| || || || |||||| Sbjct 34385 ATCTTCCGATCCATCCTCCTCCCTCAGGGTCTCCATAATTGGACCCTCAACCCGTTTCAT 34444 Query 171144 ATGATGGGTGTTGCAGGTATCCTCGGCGGTGCATTGCTTTCTGCAATTCATGGTGTTACA 171203 |||||||| ||||| || | | || | ||| | ||| | ||| || | || Sbjct 34445 ATGATGGGAGTTGCTGGAGTACCGGGTGCTGCTCCCCCACGTGCTACTCACGGCGCAACC 34504 Query 171204 GTAGAGAATACTTTGTATGAAGATGGTGATCAAGCAAACACCTTTAAGGCATTTGACACG 171263 || |||||||| ||| || ||||||||| || || || || || | | || Sbjct 34505 GTGGAGAATACACTGTTCGAGGATGGTGATGGCGCGAATACATTCCGCGCCTCCAATCCG 34564 Query 171264 ACTCAGGAGGAAGAGACATATTCTATGGTCACTGCTAATCGTTTCTGGTCGCAGATTTTT 171323 || || |||||||| ||||| ||||| ||||||||||| || ||||| || | | Sbjct 34565 ACCCAATCTGAAGAGACTTATTCCATGGTTACTGCTAATCGCTTTTGGTCCCAAACATCC 34624 Query 171324 GGTATCGCGTTCAGCAATAAGCGTTGGTTGCATTTCTTTATGCTGTTTGTTCCTGTCATG 171383 ||| | || | ||| || ||| ||| || ||| ||| | || || || |||| Sbjct 34625 GGTGTTGCCCCCCCCAACAAACGTCGGTCACACTTCCCCATGTTATTCGTACCCGTCACT 34684 Query 171384 GGTCTTTGGGTCAGTAGTCTGGGGATTATTGGTCTTGCTCTTAATCTTAGGGCTTATGAT 171443 ||| || | ||| | | || | ||||||| || | ||||| |||| ||||| Sbjct 34685 GGTTCACGGATGAGTGCTATTGGAGTAGTTGGTCTAGCCCCGAATCTGCGGGCGTATGAC 34744 Query 171444 TTCGTAAGTCAGGAGGTCAGAGCAGCAGAAGATCCAGAGTTCGAGACGTTCTATACCAAG 171503 ||||| |||||||| | |||||||||||||| |||||||| || || || ||| Sbjct 34745 TTCGTCTCCCAGGAGGTGCGCGCAGCAGAAGATCCCGAGTTCGAAACTCCTTACACAAAG 34804 Query 171504 AACATCCTATTGAATGAAGGTCTTCGTGCATGGATGGCACCAGTAGACCAACCACATGAA 171563 || || || | |||||| ||| ||||||| ||||||||| | || || || |||||| Sbjct 34805 AATATTCTGTCGAATGAGGGTATTCGTGCTTGGATGGCAGCTCAGGATCAGCCTCATGAA 34864 Query 171564 AACTTTGTGTTCCCAGAGGAAGTTCTACCTCGTGGCAATGCACTTTGAT 171612 ||| | || ||||| ||||| |||||||| ||||| || || ||||||| Sbjct 34865 AACCTCGTATTCCCCGAGGAGGTTCTACCCCGTGGAAACGCTCTTTGAT 34913 >seq8 Length=3908038 Score = 93.3 bits (102), Expect = 5e-14 Identities = 137/193 (71%), Gaps = 1/193 (1%) Strand=Plus/Minus Query 167448 TACATCCTTGACGCGGCTGAGGAAGCGGGTGTGGACATCAACTACTCGTGCCGTGCAGGC 167507 ||| |||| || || || ||||| || || | ||| | |||||||||||| || ||| Sbjct 3514417 TACGTCCTGGATGCCGCGGAGGAGGCTGGGATCGACGTGCCCTACTCGTGCCGCGCCGGC 3514358 Query 167508 GCTTGTTCGTCGTGCGCGGGAAAACTCATCTCTGGCACCGTAGATCAAAGCGATCAATCC 167567 || || | |||| || || || |||| ||||| || || || ||| ||| Sbjct 3514357 GCATGCTGCAGCTGCGTAGGCAAGATCGTCTCCGGCACTGTGGACCAGTCGGATGGATCG 3514298 Query 167568 TTCCTGGACGATGATCAAATTGCCGAAGGTTTCCTTCTCACCTGTGTGTCCTATCCAACC 167627 ||||||||||| ||||| | |||| || | | ||||||| || ||| | || |||||| Sbjct 3514297 TTCCTGGACGACGATCAGAAGGCCGGGGGCTACGTTCTCACTTGCGTGGCGTACCCAACC 3514238 Query 167628 AGCGACTGTGTTG 167640 ||||| |||| || Sbjct 3514237 AGCGA-TGTGGTG 3514226 >seq37 Length=1749879 Score = 87.8 bits (96), Expect = 2e-12 Identities = 136/193 (70%), Gaps = 1/193 (1%) Strand=Plus/Plus Query 167448 TACATCCTTGACGCGGCTGAGGAAGCGGGTGTGGACATCAACTACTCGTGCCGTGCAGGC 167507 ||| | || || || || ||||| || || | ||| | |||||||||||| || ||| Sbjct 170868 TACGTTCTGGATGCCGCGGAGGAGGCCGGGATCGACGTGCCCTACTCGTGCCGCGCCGGC 170927 Query 167508 GCTTGTTCGTCGTGCGCGGGAAAACTCATCTCTGGCACCGTAGATCAAAGCGATCAATCC 167567 || || | |||| ||| || || |||| ||||| || || || ||| ||| Sbjct 170928 GCATGCTGCAGCTGCGTGGGCAAGATCGTCTCCGGCACTGTGGACCAGTCGGATGGATCG 170987 Query 167568 TTCCTGGACGATGATCAAATTGCCGAAGGTTTCCTTCTCACCTGTGTGTCCTATCCAACC 167627 ||||||||||| ||||| | |||| || | | ||||||| || ||| | || || ||| Sbjct 170988 TTCCTGGACGACGATCAGAAGGCCGGGGGCTACGTTCTCACTTGCGTGGCATACCCGACC 171047 Query 167628 AGCGACTGTGTTG 167640 ||||| |||| || Sbjct 171048 AGCGA-TGTGGTG 171059 >seq141 Length=331334 Score = 86.0 bits (94), Expect = 7e-12 Identities = 130/184 (71%), Gaps = 2/184 (1%) Strand=Plus/Minus Query 167492 CTCGTGCCGTGCAGGCGCTTGTTCGTCGTGCGCGGGAAAACTCATCTCTGGCACCGTAGA 167551 ||| |||||||| ||| | || || ||||| || ||||| || || |||| ||| || Sbjct 57059 CTCCTGCCGTGCCGGCTCCTGCTCTTCGTGTGCAGGAAAGGTCGTCAGCGGCAGCGTGGA 57000 Query 167552 TCAAAGCGATCAATCCTTCCTGGACGATGATCAAATTGCCGAAGGTTTCCTTCTCACCTG 167611 ||||| || || |||| ||||||| ||||| || | | || ||| ||||||| || Sbjct 56999 TCAAACGGACCAGAACTTCTTGGACGACGATCAGATCGGGAATGGATTCGTTCTCACTTG 56940 Query 167612 TGTGTCCTATCCAACCAGCGACTGTGTTGTGTTGGCAGACCAAGAAGAAAACCTCTACTG 167671 || | |||||||||||| ||| | ||| | |||| || || ||| |||| | Sbjct 56939 CGTTGCGAGGCCAACCAGCGACGTTGTCATCTTGACCCACCAGGAGGATAACATCTA--G 56882 Query 167672 AGAA 167675 |||| Sbjct 56881 AGAA 56878 >seq169 Length=205192 Score = 82.4 bits (90), Expect = 9e-11 Identities = 129/184 (70%), Gaps = 2/184 (1%) Strand=Plus/Plus Query 167492 CTCGTGCCGTGCAGGCGCTTGTTCGTCGTGCGCGGGAAAACTCATCTCTGGCACCGTAGA 167551 ||| |||||||| ||| | || || ||||| || ||||| || || |||| ||| || Sbjct 121307 CTCTTGCCGTGCCGGCTCCTGCTCTTCGTGTGCAGGAAAGGTCGTCAGCGGCAGCGTGGA 121366 Query 167552 TCAAAGCGATCAATCCTTCCTGGACGATGATCAAATTGCCGAAGGTTTCCTTCTCACCTG 167611 ||||| || || |||| ||||||| ||||| || | || ||| ||||||| || Sbjct 121367 TCAAACGGACCAGAACTTCTTGGACGACGATCAGATCGGGAGTGGATTCGTTCTCACTTG 121426 Query 167612 TGTGTCCTATCCAACCAGCGACTGTGTTGTGTTGGCAGACCAAGAAGAAAACCTCTACTG 167671 || | |||||||||||| ||| | ||| | |||| || || ||| |||| | Sbjct 121427 CGTTGCGAGGCCAACCAGCGACGTTGTCATCTTGACCCACCAGGAGGATAACATCTA--G 121484 Query 167672 AGAA 167675 |||| Sbjct 121485 AGAA 121488 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592192788920160