Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Astrammina_20rara_20[genbank_20GCA_5F000211355.2_202011-04-27] 3,231 sequences; 1,450,095 total letters Query= NC_004629.1 Length=280334 Score E Sequences producing significant alignments: (Bits) Value seq187 105 1e-17 >seq187 Length=294 Score = 105 bits (116), Expect = 1e-17 Identities = 73/83 (88%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 271740 ATGGCTCCGTGACCTGGACTCGAACCAGGGACCCAGTGATTAACAGTCACTTGCTCTACC 271799 |||||||| || ||||| ||||||||| |||||| ||||||||||||| |||||||||| Sbjct 55 ATGGCTCCTCGAACTGGATTCGAACCAGTGACCCAATGATTAACAGTCATTTGCTCTACC 114 Query 271800 GACTGAGCTATCACGGAATTAAA 271822 |||||||||||| |||| |||| Sbjct 115 GACTGAGCTATCGAGGAACTAAA 137 Score = 86.0 bits (94), Expect = 1e-11 Identities = 72/86 (84%), Gaps = 8/86 (9%) Strand=Plus/Plus Query 273296 CCCGACATCCTGCTCCCAAAGCAGGCGCGCTACCA-ACTGCGCTACACTCCGTATTTAAA 273354 ||||||||||||||||||||||||||||||||||| ||||||||| |||||| || Sbjct 2 CCCGACATCCTGCTCCCAAAGCAGGCGCGCTACCAGACTGCGCTATACTCCG------AA 55 Query 273355 TTGGTGCCCGAAGTCGGATTCGAACC 273380 | | | | |||| | ||||||||||| Sbjct 56 TGGCTCCTCGAACT-GGATTCGAACC 80 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 896904574803440