Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Astrammina_20rara_20[genbank_20GCA_5F000211355.2_202011-04-27] 3,231 sequences; 1,450,095 total letters Query= NC_015287.1 Length=232878 Score E Sequences producing significant alignments: (Bits) Value seq19 95.1 2e-14 >seq19 Length=13634 Score = 95.1 bits (104), Expect = 2e-14 Identities = 248/368 (67%), Gaps = 13/368 (4%) Strand=Plus/Plus Query 109005 AGTATGGTGCAATGGCACGTTT-GACATCTTGCACCCAGGCCATATTGAATTATTCAAGG 109063 ||||||| ||||| | |||| ||| || | ||| ||| ||| |||||||||| || Sbjct 6287 AGTATGGGTAAATGG-ATGTTTCGACGTCCTTCACAGAGGTCATTTTGAATTATTTAAAT 6345 Query 109064 TTGGTAAATCTCTAGGAGATAAACTTATTGTAGCAACAGATACGGATGAAAAGATACGTC 109123 | || || |||||||| || | ||||| | |||||| ||| || || | Sbjct 6346 ACGCAAAGTCATTAGGAGATGAATTGTATGTAGGGATAGATACTGATTTTAAAGTATCAC 6405 Query 109124 AAGATAAGGGTGAAACTAAGCCCGTCAATAATCTTTGTGACAGAAT-TTCGATGTTACAA 109182 ||||||| || || | ||| | ||| || || ||||| |||| | | || Sbjct 6406 AAGATAAAGGAAAAGACAGACCCTTTAATTGCCTACAAGATAGAATGTTCGCCCT-AGAA 6464 Query 109183 GCAATAAAATACATTGATGAAGTATTTTATTTTAATGACCGAAAAGAATTGGAAGGGTTG 109242 |||| ||||| || ||| || | |||| ||||||| || ||||||| || | ||| Sbjct 6465 TCAATCAAATATATAGATAAAATCTTTTCTTTTAATACAAGACAAGAATTAGAGGAGTTA 6524 Query 109243 AT-AGAATTATACTCTCCTGATATACTATTGCTGGGTGATGATTGGAGAGGTGGTGACGT 109301 || || ||| |||| ||| |||| ||| | | ||| ||||||||||| ||| || | Sbjct 6525 ATTAGTTTTA-ACTCCCCTAATATTCTAGTAATAGGTAGTGATTGGAGAGATGGAGATAT 6583 Query 109302 AGTTGGTATACAATATGCCAAAGAAGT--AAGGTTTCTACCTCGCCTA---AATTATTCA 109356 ||||| | ||| ||||| || | | || ||| | || ||| ||||||||| Sbjct 6584 TGTTGGGAAACAGTATGCTGAACACATTCAATATTTTGA--ACGACTAATTAATTATTCA 6641 Query 109357 ACAACTAA 109364 |||||||| Sbjct 6642 ACAACTAA 6649 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 745051508016880