Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Astrammina_20rara_20[genbank_20GCA_5F000211355.2_202011-04-27] 3,231 sequences; 1,450,095 total letters Query= NC_018271.1 Length=35700 Score E Sequences producing significant alignments: (Bits) Value seq2949 149 1e-31 seq2940 107 4e-19 >seq2949 Length=1033 Score = 149 bits (164), Expect = 1e-31 Identities = 402/599 (67%), Gaps = 22/599 (4%) Strand=Plus/Minus Query 22074 AATACTATTTACAAGGCATACAATGACAAGCGCACACTTGTCGATCATTCCAGAATTTCA 22133 ||| |||||||||||| |||| | || || || | || || || ||||||||| Sbjct 758 AATTCTATTTACAAGGTTTACATTATCATCTGCGTACATTTCTATTATACCAGAATTTAT 699 Query 22134 AGAGAAAATAGAACTGCTAGAGGCAAAGGATAAGTTTGCAGTTA-CTAAGTCCGAAATAG 22192 ||| || |||||| || | | | || | ||| || || | ||| || ||| Sbjct 698 AGACAAGATAGAAACACTTAAACTACAAGACTA-TTTCCATATAACAAAGGATGAGATAC 640 Query 22193 TCAATCTAAGTT--CTGGCAGTGAGATCATATTCAAAGGTCTTAAGACCTCTAGTGGAGA 22250 ||| ||| | |||| || |||| || ||||| ||| ||||||| || ||||| || Sbjct 639 GGAAT--AAGCTATCTGGTAGCAAGATAATCTTCAAGGGTATTAAGACATCAAGTGGTGA 582 Query 22251 TCAAACAGCAGCATTAAAATCA-TTGCAAGGCGTTACAACTTGGATATTAGACGAAGCGG 22309 ||||||||| |||| || || | | |||||||| ||| || | || ||||| | Sbjct 581 TCAAACAGCCAACCTAAAGTCTCTTACTAAT-GTTACAACCTGGGTAATGGATGAAGCAG 523 Query 22310 AGGAGTTAAAAGATGAAGATACTTTCGACAAGATCGATTTCAGTATAAGGCA---AAAAG 22366 | || || |||||||| | | || |||||||| ||||| ||| |||| | |||| Sbjct 522 AAGAACTACAAGATGAAAACATATTTGACAAGATAGATTTAAGTGTAAGAGACTTAAAA- 464 Query 22367 GCAAACACAACCGAATTATCATTATTCTTAATCCAGCTACAAAAGAGCATTGGATATATA 22426 |||| | || | | || ||||| | || |||| |||||||||||||||||||||| Sbjct 463 -CAAA-AGAATAGGGTAATACTTATTTTAAACCCAGTCACAAAAGAGCATTGGATATATA 406 Query 22427 AACGCTTCTTTCAGGATAGAGGCGTTCAAGAGGGCACTAACGGAATCAAAGGCGATACGT 22486 | | |||||| | |||| ||| || || || |||| | || |||||| |||| Sbjct 405 ATAGGTTCTTTGAAGATAAAGGTGTAATGGATGGTTCTAATGCAACCAAAGGGAATACAA 346 Query 22487 GTTACATTCATACGACCTACCTAGATAACATTAAGCACCTTAACGAATCG---TTTATAA 22543 || || || || || || |||||||||| | ||| || | || | |||| || Sbjct 345 CCTATATACACACAACTTATTTAGATAACATAGAAAACC-TATCTAAAAGCTATTTAGAA 287 Query 22544 GTCGTGCCGAATCAATGCGATTAA-ACAAGCCTGATAAGTATAAACATATTATGTTAGGT 22602 | ||| || | | || || || || || || |||||| ||| ||||| Sbjct 286 --CAAATAGAAAACAT-CAAGAAACGCAGACCAGAGAAATACAAACATCAAATGCTAGGT 230 Query 22603 GGCTGGCTAGATAAAGCTGAAGGCGTTGTATTTAACAATTGGAAGTTTGGAGAGTTTAA 22661 |||||| ||| ||||| || || ||| |||| || |||||| | || || ||||| Sbjct 229 GGCTGGTTAGCAAAAGCGGAGGGTGTTATATTCTCGAACTGGAAGATAGGTGAATTTAA 171 >seq2940 Length=7741 Score = 107 bits (118), Expect = 4e-19 Identities = 91/112 (81%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 34204 TTTAAACGTTGAGCTCAAATTTAGGTTTTCCTCCATTTAACAACTCATAAGTATTATCAA 34263 |||| ||||| | ||||||||| ||| | ||||||||||| | | || || | || Sbjct 2468 TTTATACGTTTAAACTAAATTTAGGATTTTCACCATTTAACAATTTAATTGTGTTTTTAA 2527 Query 34264 TATTGTTTTCATAAATATGAGCATTACCTATAAAAAAGGTAATATTAGCTAA 34315 |||||||||| |||||||| ||||||||||||||||| ||||||||||| || Sbjct 2528 TATTGTTTTCGTAAATATGGGCATTACCTATAAAAAAAGTAATATTAGCCAA 2579 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 114114021490964