Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Astrammina_20rara_20[genbank_20GCA_5F000211355.2_202011-04-27] 3,231 sequences; 1,450,095 total letters Query= NC_018272.1 Length=35652 Score E Sequences producing significant alignments: (Bits) Value seq2949 163 6e-36 seq2940 107 4e-19 >seq2949 Length=1033 Score = 163 bits (180), Expect = 6e-36 Identities = 403/598 (67%), Gaps = 20/598 (3%) Strand=Plus/Minus Query 22884 AATACTATTTACAAGGCATACAATGACAAGCGCACACTTGTCGATCATTCCAGAATTTCA 22943 ||| |||||||||||| |||| | || || || | || || || ||||||||| Sbjct 758 AATTCTATTTACAAGGTTTACATTATCATCTGCGTACATTTCTATTATACCAGAATTTAT 699 Query 22944 AGAGAAAATAGAACTGCTAGAAGCAAAGGATAAGTTTGCGGTTACCAAGTCCGAAATAGT 23003 ||| || |||||| || || | | || | || | || ||| || ||| Sbjct 698 AGACAAGATAGAAACACTTAAACTACAAGACTATTTCCATATAACAAAGGATGAGATACG 639 Query 23004 CAATCTAAGTT--CTGGCAGTGAGATCATATTCAAAGGTCTTAAGACCTCTAGTGGAGAT 23061 ||| ||| | |||| || |||| || ||||| ||| ||||||| || ||||| ||| Sbjct 638 GAAT--AAGCTATCTGGTAGCAAGATAATCTTCAAGGGTATTAAGACATCAAGTGGTGAT 581 Query 23062 CAAACAGCAGCATTAAAATCA-TTGCAAGGCGTTACAACTTGGATATTAGACGAAGCGGA 23120 |||||||| |||| || || | | |||||||| ||| || | || ||||| || Sbjct 580 CAAACAGCCAACCTAAAGTCTCTTACTAAT-GTTACAACCTGGGTAATGGATGAAGCAGA 522 Query 23121 GGAGTTAAAAGATGAAGATACTTTCGACAAGATCGATTTCAGTATAAGGCA---AAAAGG 23177 || || |||||||| | | || |||||||| ||||| ||| |||| | |||| Sbjct 521 AGAACTACAAGATGAAAACATATTTGACAAGATAGATTTAAGTGTAAGAGACTTAAAA-- 464 Query 23178 CAAACACAACCGAATTATCATTATTCTTAATCCAGCTACAAAAGAGCATTGGATATATAA 23237 |||| | || | | || ||||| | || |||| ||||||||||||||||||||||| Sbjct 463 CAAA-AGAATAGGGTAATACTTATTTTAAACCCAGTCACAAAAGAGCATTGGATATATAA 405 Query 23238 ACGCTTCTTTCAGGATAGAGGCGTTCAAGAGGGCACTAACGGAATCAAAGGCGATACGTG 23297 | |||||| | |||| ||| || || || |||| | || |||||| |||| Sbjct 404 TAGGTTCTTTGAAGATAAAGGTGTAATGGATGGTTCTAATGCAACCAAAGGGAATACAAC 345 Query 23298 CTACATTCATACAACCTACTTAGATAACATTAAGCACCTTAACGAATCG---TTTATAAG 23354 ||| || || ||||| || ||||||||||| | ||| || | || | |||| || Sbjct 344 CTATATACACACAACTTATTTAGATAACATAGAAAACC-TATCTAAAAGCTATTTAGAA- 287 Query 23355 TCGTGCCGAATCAATGCGATTAA-ACAAGCCTGATAAGTATAAGCATATTATGTTAGGTG 23413 | ||| || | | || || || || || || || ||| ||| |||||| Sbjct 286 -CAAATAGAAAACAT-CAAGAAACGCAGACCAGAGAAATACAAACATCAAATGCTAGGTG 229 Query 23414 GTTGGTTGGATAAAGCGGAGGGCGTTGTATTTAACAATTGGAAGTTTGGAGAGTTTAA 23471 | ||||| | ||||||||||| ||| |||| || |||||| | || || ||||| Sbjct 228 GCTGGTTAGCAAAAGCGGAGGGTGTTATATTCTCGAACTGGAAGATAGGTGAATTTAA 171 >seq2940 Length=7741 Score = 107 bits (118), Expect = 4e-19 Identities = 91/112 (81%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 34152 TTTAAACGTTGAGCTCAAATTTAGGTTTTCCTCCATTTAACAACTCATAAGTATTATCAA 34211 |||| ||||| | ||||||||| ||| | ||||||||||| | | || || | || Sbjct 2468 TTTATACGTTTAAACTAAATTTAGGATTTTCACCATTTAACAATTTAATTGTGTTTTTAA 2527 Query 34212 TATTGTTTTCATAAATATGAGCATTACCTATAAAAAAGGTAATATTAGCTAA 34263 |||||||||| |||||||| ||||||||||||||||| ||||||||||| || Sbjct 2528 TATTGTTTTCGTAAATATGGGCATTACCTATAAAAAAAGTAATATTAGCCAA 2579 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 113960427384308