Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Astrammina_20rara_20[genbank_20GCA_5F000211355.2_202011-04-27] 3,231 sequences; 1,450,095 total letters Query= NC_020846.1 Length=46917 Score E Sequences producing significant alignments: (Bits) Value seq44 104 7e-18 >seq44 Length=747 Score = 104 bits (114), Expect = 7e-18 Identities = 395/611 (65%), Gaps = 12/611 (2%) Strand=Plus/Plus Query 35729 CCGTTAGAAATTGCTTTCTTGCGCTCGCCATCGCCGCCCTTTAAGAACATCTGCAGCTTA 35788 |||| || ||||||||||| | ||||||| | || || ||| | |||||||| Sbjct 115 CCGTCTGAGATTGCTTTCTTTCTATCGCCAT---CACCAGTTGTGAATGTTTGCAGCTTC 171 Query 35789 ACTAAGCCTACCAAATCAACGTCATCGGTATATGGTGCAATTGATTTCTTACCAAGGCGT 35848 | || || ||||| || ||||| |||| || || | ||||||| | | | Sbjct 172 ATAAAACCAACCAAGTCGCAATCATCTATATAAGGCGCGACACTTTTCTTATGTAACCTT 231 Query 35849 AGCGAGTAGCGCATGTATGGATCTGAATCTGGTAGCTCGATTGTTTCTGTGTCGGCATGA 35908 | || ||| | |||| | |||| || |||||||| ||||| ||||| || |||||| Sbjct 232 AACGTGTATCTGGTGTAAGCATCTTGGTCGGGTAGCTCTATTGTCTCTGTATCAGCATGA 291 Query 35909 GCAACAAACACAATGTGCATCCCTTTCTT---GTTTAGAATGCCTGCAGCCTTGCGAACT 35965 ||| ||| || |||||||| ||||| |||| ||||| || ||||| | | | Sbjct 292 CCAATAAAAACGATGTGCATATTCTTCTTTTCATTTAATATGCCAGCGGCCTTTCTCAAT 351 Query 35966 CGGCCATGCAGCGTTGCTACCGCTGA-AAGTCCGCTGCCGAATCCACCGTTGGCCTGATT 36024 | |||| | | || ||| | ||| | || ||| | || || | || ||||| Sbjct 352 CTCTGGTGCAAGCTGCCAACAGCTAACAAGCCTGC-GCCATAACCTCCCATTGCTTGATT 410 Query 36025 AATCGACTTTGGCTTTTTAGGATCGCTGTCAATAACATGCTG-AATAAACATGCGCTCTA 36083 ||| | ||| ||||| || || || |||| | || | ||||| | |||| Sbjct 411 AATGCTCGCTGGTTTTTTTGGGTCTGATTCCATAA-TGGATGTCACAAACAATCTGTCTA 469 Query 36084 AAGCCGTTGTTGAGTCAATAACCAACGTTTTGTATTGATGTTCTTCGTTAATTAGCGCAG 36143 | || ||| |||||||| | || | ||| | || || || || || | | | Sbjct 470 ACGCAGTTACACTGTCAATAATAAGAGTCTCGTACTTGTGATCCTCTTTTATCAATGACG 529 Query 36144 CAAGTTGATCCCATAAATC-ATCAACCTTACTCAACTCTGGAAATGCGTCCGGGCGTTGC 36202 | ||| ||||||| ||| || ||| | ||| ||||||| || || || ||| Sbjct 530 TTAATTGCTCCCATAGATCTTTCGCGCTTTC-CAAGACTGGAAACGCATCAGGTCGTGAT 588 Query 36203 TCTGCAGGAATTGACTGCAATCCATCCTCAGCACGAATAAAAATAGGGCTTGGGAATGTT 36262 | | || ||||| || | |||||| || || | |||| | |||| | || || | | Sbjct 589 TTTAAGGGGATTGATTGAAGTCCATCTTCTGCCCTGATAACTACAGGGTTAGGAAAAGAT 648 Query 36263 GCAGCCAGCGATGTTTTACCTAGGCCAGCTTCACCTAAAATGGTAACAATAACTGGTCTA 36322 || || || ||| ||||||| || || ||||| ||| ||| | || || | ||| Sbjct 649 GCGGCTAGGCTTGTCTTACCTAAACCCGCATCACCACAAAGCGTAGCTATCACCGCTCTG 708 Query 36323 TCTTGTGGTTT 36333 || | |||||| Sbjct 709 TCCTTTGGTTT 719 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 150007044290138