Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Astrammina_20rara_20[genbank_20GCA_5F000211355.2_202011-04-27] 3,231 sequences; 1,450,095 total letters Query= NC_020864.1 Length=205622 Score E Sequences producing significant alignments: (Bits) Value seq1174 107 3e-18 seq1264 93.3 6e-14 >seq1174 Length=194 Score = 107 bits (118), Expect = 3e-18 Identities = 122/164 (74%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 196355 AAAGATTTAAACAAAACGATCAACCCGGATGAAGCAGTTGCTTATGGTGCGGCCGTTCAG 196414 ||||| || |||||| ||||||| || |||||||| |||||||||||||| || ||||| Sbjct 23 AAAGAATTGAACAAATCGATCAATCCAGATGAAGCCGTTGCTTATGGTGCCGCTGTTCAA 82 Query 196415 GCTGCTATTCTCTCAGGTGTTGACAATAATAACGTCCAAGATCTTCTGCTACTTGATGTT 196474 || || ||| | | || | | | | | | || ||||| | || |||| |||||| Sbjct 83 GCCGCCATTTTAACCGGAGATAAATCTGAAGATGTTAAAGATTTACTTTTACTCGATGTT 142 Query 196475 GCACCCGTATCCCTGGGTCTTGAAACAGCGGGTGGTGTTATGAC 196518 ||||| | || ||||| | ||||| || |||||||| ||||| Sbjct 143 GCACCGCTTTCATTGGGTATCGAAACGGCTGGTGGTGTGATGAC 186 >seq1264 Length=214 Score = 93.3 bits (102), Expect = 6e-14 Identities = 126/176 (72%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 195812 CCAACAGCGGCTGCAATTGCTTATGGTCTGGACAAGAACAAGGACGAAGATAAAAATGTA 195871 || || || || || | || || ||||||||||| || | ||| |||| | ||||| Sbjct 182 CCCACGGCAGCCGCCCTGGCATACGGTCTGGACAAAAAGAGCGACAAAGAGACCAATGTG 123 Query 195872 TTGATCTTTGATCTCGGTGGTGGTACGTTTGATGTCTCACTTCTCAATATTGAAGGTGGT 195931 | ||||| ||||| ||||| || || || || || || | || || || || || Sbjct 122 CTCATCTTCGATCTGGGTGGAGGAACATTCGACGTGTCGTTGCTGTGCATGGACGGAGGC 63 Query 195932 ATATTCGAAGTAAAGGCTACTGCTGGTGATACTCATCTAGGTGGTGAAGATTTCGA 195987 | || || || || || |||||||||||||| ||| | |||||||| |||||||| Sbjct 62 GTGTTTGAGGTGAAAGCCACTGCTGGTGATACGCATTTGGGTGGTGAGGATTTCGA 7 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657835830582320