Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Astrammina_20rara_20[genbank_20GCA_5F000211355.2_202011-04-27] 3,231 sequences; 1,450,095 total letters Query= NC_021806.1 Length=100418 Score E Sequences producing significant alignments: (Bits) Value seq19 197 9e-46 >seq19 Length=13634 Score = 197 bits (218), Expect = 9e-46 Identities = 415/617 (67%), Gaps = 19/617 (3%) Strand=Plus/Minus Query 31854 AGATGAGAGGATAGCCTTCAAACCTTTTCAATATCAATGGGCGTATGATTATTGGTTTAA 31913 ||| || || |||| | |||||||||| |||||||| || | ||||||||||| || Sbjct 13266 AGAAGAAAGAATAGTTTACAAACCTTTTGAATATCAAGAAGCATCCGATTATTGGTTAAA 13207 Query 31914 ACAACAGAATGCACATTGGTTGCATACTGAAATCAATATGAACGATGATGTTAAGAATTG 31973 |||||| | ||||||||| | || || ||| | ||||| |||||||| |||| Sbjct 13206 ACAACATCAAGCACATTGGCTACACACAGAAGTACCTATGATGTCAGATGTTAATGATTG 13147 Query 31974 GAGCGAAGACTTAGATGAGAAAGAGAAAAATGTTATAGGTAATATCTTAAAAGGATTTAC 32033 || || || | |||| || |||||| |||| |||| |||| ||||||||||| | Sbjct 13146 GAAACAAAACCTTACTGAGTCTGAAAAAAATATTATTGGTACTATCCTAAAAGGATTTGC 13087 Query 32034 TCAAACAGAGTGCGAAGTAGGAGATTATTGGTCGTCCTATA-TTCCAAAATGGTTTCCTG 32092 ||||||||| | || ||||||||| | | | || | | | |||||| Sbjct 13086 TCAAACAGAAACTGTTGTGAATGATTATTGGAC-TAATTTAGTAACTAGCTGGTTTAGAA 13028 Query 32093 TACCTGAAATAAAATTAATGGCTCAAACTTTTGGAGCTTTTGAAACAATACATGCAATAG 32152 ||||||||||| ||||||| ||||||||| || |||||||| || ||||| || Sbjct 13027 AACCTGAAATAATTAAAATGGCTGTAACTTTTGGTGCGTTTGAAACTATCCATGCTGAAG 12968 Query 32153 CTTATAGTTACTTAAATGATACGCTGGGATTAGATGATTTTGAATCATTTATGGAAGACC 32212 ||||| || |||||||| | || |||||| ||||| ||| | ||||| Sbjct 12967 CTTATTCTTTATTAAATGAAGAATTAGGTTTAGATAATTTTAGTGAATTCCTAGAAGATG 12908 Query 32213 AAGCTACAATGGATAAGCTAGCTGTATTGATGGAA---ATAGATCCAGATA--------- 32260 |||||||||||| ||| || | | | | | ||| | |||| | ||| Sbjct 12907 AAGCTACAATGGCTAAAATATCAGCACTAACAGAAGTTAGAGATTCTCATAACGGTGAAG 12848 Query 32261 -CAAATGATATTAAAGAGATTGCAAGAAGTTTAGCGTTGTTTAGTGCAGCTGCTGAAGGT 32319 || || || ||||| |||| | |||||| | || ||| | ||||||| Sbjct 12847 CTAATTGGCATGAAAGA----GCAAAATCTTTAGCTATATTCTCTGCTTTTACTGAAGGA 12792 Query 32320 ATTCAATTGTTTAGTTCATTTGCAGTCTTATTAAGCTTTAAAAAGAAGAACATACTTAAT 32379 || | || ||| |||||| ||||| |||||| |||||| | || | |||||| Sbjct 12791 GTTAATTTATTTTCTTCATTCGCAGTTTTATTATCATTTAAATTAGACAATAAACTTAAA 12732 Query 32380 GGTATAGGTAAACAAATGGAATTTAGTGTTAGAGATGAAAGTCTTCACTCTGAAGCTGGA 32439 ||| |||| || | | || | ||| ||||||||||| | || || ||||| ||| Sbjct 12731 GGTGTAGGACAAATAGTTGAGTGGAGTATTAGAGATGAATCATTACATTCAGAAGCGGGA 12672 Query 32440 TGTAAATTATTTAGAAC 32456 ||| || |||||||| Sbjct 12671 TGTTGGTTGTTTAGAAC 12655 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 321200151342589