Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Astrammina_20rara_20[genbank_20GCA_5F000211355.2_202011-04-27] 3,231 sequences; 1,450,095 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq3137 93.3 1e-13 seq1174 91.5 4e-13 seq1264 86.0 2e-11 >seq3137 Length=2458 Score = 93.3 bits (102), Expect = 1e-13 Identities = 60/66 (91%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 424186 TGGCGTAATTGGATAGCGCACCAGACTTCTAATCTGGGGGTTGCGAGTTCGAATCTCGCC 424245 ||||| ||||||||||||||||||||||||||||||||||||||| |||||| || ||| Sbjct 2297 TGGCGCAATTGGATAGCGCACCAGACTTCTAATCTGGGGGTTGCGGGTTCGACTCCCGCA 2238 Query 424246 AGGGGT 424251 ||||| Sbjct 2237 TGGGGT 2232 >seq1174 Length=194 Score = 91.5 bits (100), Expect = 4e-13 Identities = 122/169 (72%), Gaps = 8/169 (5%) Strand=Plus/Minus Query 183165 GCAGTTTCTAATCCTAATGATAATGGTGCTACATCTAGTAATAATAAATCTGATGTTTTA 183224 || ||||| | || ||||| | ||||| ||||| ||||| | ||||||| | Sbjct 171 GCCGTTTCGATACCCAATGAAAGCGGTGCAACATCGAGTAAAAGTAAATCTTTAACATCT 112 Query 183225 TCTGATTTAATATCACTTAAAATTGCAGCTTGAACAGCTGCACCATATGCAACAGCTTCA 183284 || |||||| | ||||||| || ||||||||||| |||||||| ||||| |||||| Sbjct 111 TCAGATTTATCTCCGGTTAAAATGGCGGCTTGAACAGCGGCACCATAAGCAACGGCTTCA 52 Query 183285 TCTGGGTTAATTGAACGAGAT----AATTCTTTGCCATTAAAAAATTCT 183329 ||||| ||||| ||| | ||||||||||| || ||| | ||| Sbjct 51 TCTGG----ATTGATCGATTTGTTCAATTCTTTGCCGTTGAAATAATCT 7 >seq1264 Length=214 Score = 86.0 bits (94), Expect = 2e-11 Identities = 128/182 (70%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 349712 CCCACTGCTGCAGCAATTGCATATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATT 349771 ||||| || || || | ||||| || || || |||| ||| ||| |||| | ||| | Sbjct 182 CCCACGGCAGCCGCCCTGGCATACGGTCTGGACAAAAAGAGCGACAAAGAGACCAATGTG 123 Query 349772 CTTATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGA 349831 || || || ||| | ||||| || || || || || || | || | || | || Sbjct 122 CTCATCTTCGATCTGGGTGGAGGAACATTCGACGTGTCGTTGCTGTGCATGGACGGAGGC 63 Query 349832 ATTTTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGATAAT 349891 | ||||| || ||||| |||||||||||||| ||| | ||||| || ||||| || ||| Sbjct 62 GTGTTTGAGGTGAAAGCCACTGCTGGTGATACGCATTTGGGTGGTGAGGATTTCGACAAT 3 Query 349892 CG 349893 || Sbjct 2 CG 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515191672729493