Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Astrammina_20rara_20[genbank_20GCA_5F000211355.2_202011-04-27] 3,231 sequences; 1,450,095 total letters Query= NC_028773.1 Length=182145 Score E Sequences producing significant alignments: (Bits) Value seq408 260 2e-64 >seq408 Length=9026 Score = 260 bits (288), Expect = 2e-64 Identities = 846/1306 (65%), Gaps = 71/1306 (5%) Strand=Plus/Plus Query 152935 CACGACGAAACCAGTCTTTTCCCTTACTGCGTTTCTGTTAATATGTATCCTTATCTAACT 152994 || || ||||||||||| |||||||| |||| ||| |||||| |||| | | Sbjct 279 CATGATGAAACCAGTCTAAAACCTTACTGTACTTCTATTAGTATGTACCCTTTTTTGTTA 338 Query 152995 GACGGCTTGACCAAACTAGGTGGCGAGTCAGAAGCTCCGCACAATCTGCAATCTTTCTGT 153054 ||||| || || ||| |||||||||||||| |||| || | || | ||||||| || Sbjct 339 GACGGTTTAACTAAATTAGGTGGCGAGTCAAAAGCCCCTAAACATTTAGAATCTTTTTGC 398 Query 153055 GGCTCATTCGTTAATCTGGTGTTTGCGATTAGTTCTCAGTTTGCTGGTGCTGTTGCAACT 153114 || | || || || || | ||||| ||| | |||||||||| |||||||| ||||| Sbjct 399 GGTGCTTTTGTAAACCTTATTTTTGCTATTTCTGCTCAGTTTGCCGGTGCTGTGGCAACC 458 Query 153115 GTTGAATTCCTGATGTATTTTGAACACTTCGTTAAAAAGGAATATGGTGAAGATTGGTAT 153174 |||||||| || | || ||||| |||| | | ||||||||| | || | | Sbjct 459 GTTGAATTTCTCACTTACTTTGATTACTTTGCGCGATTGGAATATGGCAATGACTACTTA 518 Query 153175 ACCCGTCTTGATGAAGTTGTGACTATGGGTGTGAAGCCTCGCACGATGCGACAAGTTCTG 153234 | | || || || ||| | ||| ||| || | || Sbjct 519 AGCACTC---ATCAATTTG-AAATAT-----------------CGA----ACCATTT--- 550 Query 153235 GAACAACACCTGCAAGGCATTGTTTATAGCATTAACCAGCCTGCCGCAGCGCGTGGTTAT 153294 |||||| || | |||||| ||||||||||||||| || ||||| |||||| Sbjct 551 --ACAACA--TG-------TCGTTTATGCCATTAACCAGCCTGCTGCTGCGCGCGGTTAT 599 Query 153295 CAATCAGTCTTCTGGAATATCAGTCTGTTTGATGAACATTATTTCAATTCTCTGTTCGGT 153354 ||| ||||| |||||||| || || ||| | |||||||| ||| |||| | Sbjct 600 CAAAGTGTCTTTTGGAATATTTCCCTTTTCGATCAGCATTATTTTGCCTCTATGTTTGAA 659 Query 153355 GAC-TTCTGTTTCCCAGATGATGATATGACTCAGCCAATGTGGTCTGGTGTTGATGCGGT 153413 || || | |||||| || | || |||| | ||| || ||| | Sbjct 660 AACTTTGTTTTTCCC-------GACTTTTCTGAGCCTAACTGGCAAACAGTCGATAAATT 712 Query 153414 TCAGC-GTCTGTTCCTGTCTTGGTTCAACAAAGAGCGAGAAAAGAAAGTTCTGACATTCC 153472 || | || | || || ||||||| |||||||| |||||| | || || || |||| Sbjct 713 ACAACAGTAT-TTTCTTACTTGGTTAAACAAAGAACGAGAACAATCTGTACTCACTTTCC 771 Query 153473 CTGTCGTTACTGCTGCACTTCTGACAGAAGATGGAAAATGCAAAGATGATCAGTTTACTC 153532 |||| || || || || | ||||| ||| |||| | || |||||| | | ||| | | Sbjct 772 CTGTAGTGACCGCCGCTATGCTGACTGAAAATGGTCAGTGTAAAGATCACAACTTTGCGC 831 Query 153533 GTTATCTATCACAAGAAATGTCCGAAGGTAACACTTTCTTTGTGTACATGTCCGACTCCG 153592 | || | || ||| | | ||| || | || || | || | || || || Sbjct 832 AGAAATTAGCCGAACAAAAAGCAGCAGGAAATTCATTTTTCATTTATTTATCTGATAGCG 891 Query 153593 CCGATTCACTGGCGTCGTGCTGTCGTCTTCGTAATGAAGTGAATGACACAAGTTTTTCCT 153652 | |||||||| || || || ||||| || ||||||||| | ||| | | |||||| | Sbjct 892 CTGATTCACTCGCCTCATGTTGTCGACTGCGTAATGAAATATCTGATAATACTTTTTCTT 951 Query 153653 ACTCACTGGGAGCTGGTGGTGTCGCCACAGGTTCGATCAACGTTATGACGCTGAACATTA 153712 | | | || || |||||||| ||||||||||| || || ||||| || | || || | Sbjct 952 ATACCTTAGGCGCGGGTGGTGTTGCCACAGGTTCAATTAATGTTATTACCATCAATATGA 1011 Query 153713 ATCGATTCATTCAACAAAATGGTCGTGATCTTGATGCTTTGCGTGATGTTATCGGACGCA 153772 |||| || | |||| |||| |||||| | | | | || | | | Sbjct 1012 ATCGTTTAGT---ACAAGATGGCCGTGATTTAAAAAC---------AGAAATAGAAAAAA 1059 Query 153773 TTCACAAATACCAGATCGCATATCGTACCCTGATTGAAGATGATCTTCGAAATGGAATGT 153832 | || || ||||| | || ||||| | ||||| ||||| | | | ||| Sbjct 1060 TACAAAAGTACCAAGTTGCTTATCGCAAACTGATGGAAGAATACAAAGCACAAGGAGCAC 1119 Query 153833 TGACTGTTTACGACGCTGGATTTATCAGCTTGGATAAACAATTCTGCACAATCGGTATTA 153892 | | ||||| || ||||| |||||| || || |||||||| | || || ||||| | Sbjct 1120 TCTCAGTTTATGATGCTGGTTTTATCTCATTAGACAAACAATTTTTGACCATTGGTATAA 1179 Query 153893 ACGGTTTCGTAGAAGCTGCCGAATATCTGAAAATTGACATTTCAGCA--AATCAAGATTA 153950 | ||| | | ||||| || |||| | || ||| || || | | ||| | || || Sbjct 1180 ATGGTATGGCCGAAGCCGCTGAATTTAATAATATT--AATGTCGGTAATAATGATGAATA 1237 Query 153951 TTTTGATCTATGTAA--AGACAT-TCTTGGAACCATCTATCAAGAAAACCGAAAAATCAC 154007 || | ||| | | |||| || || | || ||||||| ||||| | | || Sbjct 1238 CAAAAAT-TTTGTTAGCAAACATCTCAAGGTA--ATTTATCAAGCAAACCAAGACGCCAA 1294 Query 154008 GGCAGAAACTGGTGTTAAGTTCAATACTGAATTTGTTCCAGCAGAAAATCTCGGCGTTAA 154067 || |||| || ||| ||||||||||||||||| ||||||||||| || || || Sbjct 1295 AAAAGCCTATGGTTATATGTTTAATACTGAATTTGTTCCTGCAGAAAATCTTGGGGTGAA 1354 Query 154068 AAATGCTAAATGGGATGCAAAAGATGGTTTATATGTCCCAAGGGACGTGTATAATAGTTA 154127 |||| | ||||||||| ||||| |||| | || |||||| ||||| ||| Sbjct 1355 AAATTCAAAATGGGATATCAAAGACGGTTATCAGGTAAATAGGGACTGTTATAACTCTTA 1414 Query 154128 TTTCTATGTCGTCGAAGATGAAGAAACGAATCCTCTGGATAAATTCATACTTCACGGTAA 154187 ||| ||| | || ||||| | || || |||| || || ||||| | | || || | Sbjct 1415 TTTTTATCTTGTTGAAGACAATGAGACCAATCACCTAGACAAATTTGTTATGCATGGCCA 1474 Query 154188 AGATGTTATTCAGTATCTTGATGGTGGCTCCGCTCTGCATTTGAAT 154233 ||| | || |||||||||||||| ||||| || | ||||| ||| Sbjct 1475 AGAAATGATCCAGTATCTTGATGGGGGCTCAGCCTTACATTTAAAT 1520 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 582712464749800