Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Astrammina_20rara_20[genbank_20GCA_5F000211355.2_202011-04-27] 3,231 sequences; 1,450,095 total letters Query= NC_028819.1 Length=43190 Score E Sequences producing significant alignments: (Bits) Value seq3053 178 4e-40 seq44 152 1e-32 >seq3053 Length=2213 Score = 178 bits (196), Expect = 4e-40 Identities = 521/789 (66%), Gaps = 34/789 (4%) Strand=Plus/Minus Query 36884 TTATAATTGATGAA-GCGCATGGTTTAACGCCAACGATAAAATTCATCATCGACAAGATG 36942 |||| ||||||||| | | | ||| ||||||| ||||| || || || || || Sbjct 2208 TTATTATTGATGAATGTGACTTAATTA-CGCCAACAGTAAAAGCTATTATTGAAAAAATA 2150 Query 36943 AAAGAAAGCAACCCAAAACTAAGAATAATAGGGTTAAGCGCGACACCTTACAGGTTAGGC 37002 |||||| |||| |||||| ||||| |||| || || |||||||||||||| | || Sbjct 2149 AAAGAAGGCAATCCAAAATTAAGAGTAATTGGTACAACTGCGACACCTTACAGAATGGGA 2090 Query 37003 GATGGCTATATATACCAAACAGATCACAATGATAAACCAGTATTTGAAGGCTCTACAAAA 37062 || || || ||||| | || | | |||||| || || |||| Sbjct 2089 ACAGGGTACATTTACCAGATGAATGAAGAAGATAAAGCAATAGGTGAA------------ 2042 Query 37063 AACCCATATTTTGCAAAGCAAGTTTAC-CGATTAACAGCGCACTACTTAATACAACAAGG 37121 || | ||||||| || | ||||| |||| | |||| | ||||| | ||| Sbjct 2041 AATGCTTATTTTGTTAAAAAGGTTTATACGAT-AGGTGCGCCAGATTTAATTGACCAAAA 1983 Query 37122 GTTTTTAACTCCTCCAGTTGTTGGTGCTATTAACGTTGATTCATACGATACAAGCGGCTT 37181 | |||| | || ||| | | ||||| |||||| | | || ||||| | || | Sbjct 1982 ATATTTAGCACCACCATTAATAGGTGCAATTAACAGCGGTCACTATGATACTATTGGTAT 1923 Query 37182 AGTCCTTAATAGTATGGGTAAATACAACAATACAGACATAGACAAAGCGTTTGTAGGCCA 37241 |||||| |||||||| | || || || | || | ||| | |||||| Sbjct 1922 GACTGTTAATAAAATGGGTAAGTTTAATAAAGATGATGTTGATAGAGCATACAAAGGCCA 1863 Query 37242 TGGAAGAAAGACGGCGGCAATTGTGGCGGACGTTATAAAGCAGAGCCAAA-ACCGCAAAG 37300 || ||||| || |||||| || || |||||| |||| | | ||| || | |||| Sbjct 1862 AGGCAGAAAAACCAGTTTAATTGTAGCTGATGTTATAGAGCA-ATCAAAAGACAGAAAAG 1804 Query 37301 GCGTTATGTTCTTTGCGGCCACCATTCAACATGCTGAAGAAATAATGGCATCGTTACCGC 37360 | |||||||| ||||| || || ||||||||||| ||||||||| | ||| |||||| Sbjct 1803 GTGTTATGTTTTTTGCTGCAACTATTCAACATGCAGAAGAAATACTAGCAAGCCTACCGC 1744 Query 37361 CAGCTAAAAGCAAGATAGTAACCGGTAAAACATCGAGCGCA-GACCGTGAAAAGATA--A 37417 |||| | ||| | || | || ||||| ||| ||| | || || | |||| | Sbjct 1743 CAGCAATGAGCGCGTTAATTACTGGTAAGACAAA-AGCAAAAGAACGC--AGCGATACCA 1687 Query 37418 TATCTGACTTTAAGAATCAAGCCT-TTAAATACCTAGTTAACGTATCAGTGTTAACAACG 37476 || | ||||| || | ||| ||||||| ||||||| ||||||||||||||| Sbjct 1686 TAGAGAAGTTTAA-AAGCCAGCAGATTAAATATATAGTTAATGTATCAGTGTTAACAGTT 1628 Query 37477 GGCTTTGATGCGCCTCACGTTGACGTTATAGCTATTTTGCGAGCTACTGAGTCAGTCGGC 37536 || |||||||||||||| || || || || || | || |||| ||||| |||| | Sbjct 1627 GGTTTTGATGCGCCTCATGTCGATGTCATTGCATTGTTAAGAGCAACTGAATCAGGAAGG 1568 Query 37537 TTGATGCAACAAATAATAGGGCGAGGTTT----GCGCCTAGACGATGGTAAAGAGGATTG 37592 || |||| || | || || || ||| | || | || | ||||| ||| Sbjct 1567 TTATTGCAGCAGGTTATTGGTCGTGGTCTAAGACCGTCAGTACAA----AAAGATGATGT 1512 Query 37593 TTTAGTTTTAGACTACGCTGAGAACGTTGATAAACATTGTCCAGATGGTGACTTGTTCAA 37652 ||| ||||||| || || || ||| |||| || |||||||| ||||| | || || Sbjct 1511 GTTAATTTTAGATTATGCAGAAAACATTGAGCGCCACTGTCCAGACGGTGATGTATTTAA 1452 Query 37653 CCCTGAAAT 37661 |||||||| Sbjct 1451 TCCTGAAAT 1443 >seq44 Length=747 Score = 152 bits (168), Expect = 1e-32 Identities = 451/683 (66%), Gaps = 12/683 (2%) Strand=Plus/Minus Query 34157 AAGCCAAAAGATAGAGCGACTATTGTCACTATCTGCGGTGATAGCGGTTTAGGCAAAACA 34216 || ||||| || |||||| || | || | || |||||| |||||||| || ||| Sbjct 719 AAACCAAAGGACAGAGCGGTGATAGCTACGCTTTGTGGTGATGCGGGTTTAGGTAAGACA 660 Query 34217 AGCCTTGCTGCAACATTCCCTAAACCAATCGTTATACGTGCAGAGGATGGCTTGCAAGGT 34276 ||||| || ||| | || ||||| || | ||||| | ||||| ||||| | ||| Sbjct 659 AGCCTAGCCGCATCTTTTCCTAACCCTGTAGTTATCAGGGCAGAAGATGGACTTCAATCA 600 Query 34277 GTTCCAGAAGATATACGCCCCGATGCGTTTCCAGT-TATTAAAGCGGTTGAAGATTTATG 34335 | || | | ||| || |||||||||||||| | ||||| | ||||| |||| Sbjct 599 ATCCCCTTAAAATCACGACCTGATGCGTTTCCAGTCTTGGAAAGC-GCGAAAGATCTATG 541 Query 34336 GGGTCAATTAAAATCTTTGCTGCAAGAAGAGCATGAATATAAAACGCTGGTTATTGATTC 34395 || ||||||| || ||| | |||| || || | || | || || ||||||| Sbjct 540 GGAGCAATTAACGTCATTGATAAAAGAGGATCACAAGTACGAGACTCTTATTATTGACAG 481 Query 34396 TGCAACAGCTTTAGAGCGTTTATTTATCAGTCAT--ATTATTGAAAGTGACCATAAAAAA 34453 || ||| || ||||| | || ||| | | ||| ||||| ||| |||| |||||| Sbjct 480 TGTAACTGCGTTAGACAGATTGTTTGT--GACATCCATTATGGAATCAGACCCAAAAAAA 423 Query 34454 CCA-CGTTCGATCAACCAGGCGTTAGGTGGGTACGGCGCGGGGCTTG-CCGCAG-TAGCT 34510 ||| || | || || || || | || || || ||||| |||||| || | | || Sbjct 422 CCAGCGAGC-ATTAATCAAGCAATGGGAGGTTATGGCGC-AGGCTTGTTAGCTGTTGGCA 365 Query 34511 GCTTTACATCAACGTGTGCGTAAAGCGTGCGGGTTACTTAACGAGCGTAAAGGTATGCAC 34570 || || || || | || | || || || || | || || || ||||||| Sbjct 364 GC-TTGCACCAGAGATTGAGAAAGGCCGCTGGCATATTAAATGAAAAGAAGAATATGCAC 306 Query 34571 ATTGTATTTGTAGCGCACGCAGATACAGAAACAATTGAACTACCAGACCAAGAACCTTAC 34630 || || ||| | | || || |||||||| ||||| || ||||| |||||||| ||||| Sbjct 305 ATCGTTTTTATTGGTCATGCTGATACAGAGACAATAGAGCTACCCGACCAAGATGCTTAC 246 Query 34631 ACACGCTACTCGTTGCGCCTTGGCAAGAAGTCTGTAGCGCCTTATGTTGATGATAGTGAC 34690 || | ||| |||| | | ||||| ||| ||||||||| | |||||| | ||| Sbjct 245 ACCAGATACACGTTAAGGTTACATAAGAAAAGTGTCGCGCCTTATATAGATGATTGCGAC 186 Query 34691 CTAGTAGGCTTCTTAAAGCTTGAAACGTTCCTTACAGGCGATGGTGAGCGTAAAAAAGCG 34750 | || || || | ||||| |||| ||| || || ||||| || | || ||||| Sbjct 185 TTGGTTGGTTTTATGAAGCTGCAAACATTCACAACTGGTGATGGCGATAGAAAGAAAGCA 126 Query 34751 CTAAGCGACGGCACTCGCCAACTAATTTGTTATGCGACAGCGGCAAACGTAAGTAAAAAC 34810 | ||||| || || || || |||||| ||| | || ||| | || || || Sbjct 125 ATCTCAGACGGAACGCGAGTTCTGGTTACTTATGCAACATCAGCCAACATCAGCAAGAAT 66 Query 34811 CGCTATGGCATTGAAGAAGAGAT 34833 | || ||||| |||||| || Sbjct 65 AGATACGGCATAACAGAAGATAT 43 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 138081101883744