Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chondrus_20crispus_20[genbank_20GCA_5F000350225.2_202013-05-22] 926 sequences; 104,980,420 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq774 111 3e-19 seq594 109 1e-18 seq120 86.0 1e-11 >seq774 Length=913059 Score = 111 bits (122), Expect = 3e-19 Identities = 321/489 (66%), Gaps = 5/489 (1%) Strand=Plus/Plus Query 281582 AGACCAACCGGTTCCAATACCACTTGAACCATTTACCAAAATACTCGGGATAATAGGTAC 281641 ||||||||| || ||||| || ||| || ||||||| | |||| || || || Sbjct 641194 AGACCAACCAGTACCAATTCCTTCTGATCCGTTTACCAGGACTGTCGGAATGATTGGGCA 641253 Query 281642 ATAACATTCTGGTTCAATTTTATCACCATCATCATACAA-ATACTTCAGAAGGTTATCAT 281700 || || | ||||| ||| | | ||||| |||| ||| || || | ||||| Sbjct 641254 GTACCACTTCGGTTCGATTACCTTGTCCTCATCG-ACAAGATAGGACAAAACGGCATCAT 641312 Query 281701 CTGTATCGACGAAAACCTGTCGCGTCTTAGGGTTCAGTTTCGTGAAGATATACCTTGCAC 281760 ||| || ||| | ||| | | ||| ||||| ||| |||| |||| || | Sbjct 641313 CTGCTTCAGGGAACATGGCTCGAGCAATCGGGGCTAGTTTTGTGCAGATGTACCGAGCGC 641372 Query 281761 TCGCGTGGTCTTTACCACCCTGCAGCCTCGACCCAAACTGACCCTCCGGCAACAACCAGT 281820 |||| ||||| ||||| || || | || ||||||||| |||| | ||| | | Sbjct 641373 TCGCAGCATCTTTTCCACCTGTTAGTCTGGTACCGAACTGACCCGCCGGAACCAAAAAAT 641432 Query 281821 TAATGTTATTGCTCCCGACGTAATCCTGAGCCAGGTTGACGATTGTCCCCTGAAGCGATA 281880 ||| ||| ||| ||| ||| ||| || |||| |||||||| || | |||| Sbjct 641433 TAAGGTTGTTGGACCCCACGAAATTTTGCCCCAGCCCAACGATTGTTGATTGCAAAGATA 641492 Query 281881 CCTCACCGTGGTGATAGGCGCTGTGTTCGGCAACATAACCACTGAACTGTGCTACCTTCA 281940 | || |||||| |||| || | ||||| | | ||| || | || ||||||||| Sbjct 641493 CATCTCCGTGGCGATAAGCAGTCTGTTCAGATATATAGCCTGCAAGTTGGACTACCTTCA 641552 Query 281941 CGTCTGATGTCA--AGTTGCGTTTGAAAGC-GCAATATAATACTTTTCGTTGAGAAGGCT 281997 ||| || || | | | | ||||| || | | | || |||||||| || |||| Sbjct 641553 GCTCTTTCTTCGTGAGCTTCCTCTTAAAGCAGCCAAACATAACCTTTCGTTGTGATGGCT 641612 Query 281998 TGAAACCATCAACGACAGACGGAATGCTGCGTTCCAGGTCATACCGCGAGAACAAAATAA 282057 ||||||| ||||||||| ||||||| ||||| ||| ||| ||||| | ||| | Sbjct 641613 TGAAACCGTCAACGACACACGGAATTGATCGTTCATTGTCGTACACGGAGAAAAGAATCA 641672 Query 282058 GTTCCTTGT 282066 ||| |||| Sbjct 641673 ATTCTTTGT 641681 >seq594 Length=586499 Score = 109 bits (120), Expect = 1e-18 Identities = 255/381 (67%), Gaps = 9/381 (2%) Strand=Plus/Plus Query 319287 CTTCATGATGGCACGGTCCTTCGAAGTGATACCCTCGAGGAACCCGGGCTCGGGGAACTT 319346 ||| |||||||| |||| || ||||| || || | | || |||| ||| ||||| Sbjct 310524 CTTAATGATGGCCTTACCCTTGGAGGTGATGCCATCCAAGTTTCCTGGCTTGGGAAACTT 310583 Query 319347 CCACGTGGTCTTCGTCTCGGTAAGGGCGTAGTAA---CTCGCTGATTCGGGACGCTTCTT 319403 || || ||| ||||| | || | |||| ||||| || ||||| |||||| Sbjct 310584 AAACTTGAGCTTGGTCTCCTTGAGCTCAAAGTAGGTCCTCGCC--TTGGGGAC-CTTCTT 310640 Query 319404 CACGAACTCGGACAGATTTCCCTTGTACTTCTTCAGCTTTAGGTTAGGTTCGTAATGGAT 319463 || || |||| || || ||||||| | ||| ||||| || || ||| ||||| Sbjct 310641 GACAAATTCGGTCAAGTTGCCCTTGTGCAGCTTGAGCTTCAGATT---TTCAATCTGGAT 310697 Query 319464 AATAGAGGTGCAAACAGCGTCGAGGAACCCGGAGTCGTGTGACACAATCACGCACGAAAC 319523 ||| ||||| | || | | ||| |||||||| || || | || || || Sbjct 310698 GATATGAGTGCAGCAATTGTTCAATAGCCCCTTATCGTGTGAAACGATGATGCTCGTGAC 310757 Query 319524 GTCCTTAAGGTTGATCAGGTATTCAATCAACCACCTCACGTTAGACACAGAAAGATGGTT 319583 |||||| ||||| ||| ||| || | |||| | ||||| ||| ||||||||| Sbjct 310758 GTCCTTGAGGTTATTCAAGTAGTCCTCGACCCACTTAACGTTGATGACATCAAGATGGTT 310817 Query 319584 GGTCGGCTCGTCAAGAAGCAGTAGCTTTGCGTTCAGGAGCATTGCACGTGCAAGAGCGAG 319643 ||| || || ||||| || || | | || || ||||||| |||||||| || || || Sbjct 310818 GGTGGGTTCATCAAGGAGAAGGATGTCGGCATTTTGGAGCATGGCACGTGCGAGGGCCAG 310877 Query 319644 TTTCATTTTCCACCCTCCGGA 319664 ||||| ||| || ||||| Sbjct 310878 CTTCATGCGCCAGCCGCCGGA 310898 >seq120 Length=21401 Score = 86.0 bits (94), Expect = 1e-11 Identities = 55/60 (92%), Gaps = 0/60 (0%) Strand=Plus/Minus Query 165716 CTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGCCCCACG 165775 |||||||||||||||||||| |||||| |||||||| |||||| ||||||||||||| || Sbjct 735 CTAGCTCAGTCGGTAGAGCGACAGACTCTTAATCTGTTGGTCGCGGGTTCGAGCCCCGCG 676 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057811449579380