Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chondrus_20crispus_20[genbank_20GCA_5F000350225.2_202013-05-22] 926 sequences; 104,980,420 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq759 178 2e-39 seq898 82.4 9e-11 >seq759 Length=98512 Score = 178 bits (196), Expect = 2e-39 Identities = 632/978 (65%), Gaps = 26/978 (3%) Strand=Plus/Minus Query 53687 ATTACAAACATGTTCAATGCAATAGATGCCAGATTACAAACGGCTACCTCATTAGCATCC 53746 ||||||||| |||| | |||||||| |||| || ||||| || ||||||| | | Sbjct 48482 ATTACAAACTTGTTGAGGGCAATAGAAGCCAAGTTGCAAACAGCAACCTCATCCGGGGCA 48423 Query 53747 GCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGA 53806 | ||| | | ||||| ||||||||||| | | ||||||||||| | ||||| || Sbjct 48422 GTATACTCAACAATCTCTGTGCAAAGATTGGAAGATTTGATGGTTCCGAGGTTTTGCTGG 48363 Query 53807 TTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGCGTACCAGTTTCAATCTGG 53866 || ||||| |||||| |||||||| || || ||| | || | ||||||||||||||| Sbjct 48362 TTGCTCTTCCGGTTACAAGCATCCTTGTAGAGCATGTACGGATTTCCAGTTTCAATCTGG 48303 Query 53867 GATTCTATAATCGCTTTCCAGA--CGACACGAGCCTTTATTATAGATTTGTAT-CTC--T 53921 | ||| | ||| || | ||||| | || || | || || || | ||| Sbjct 48302 GCTTCGAGAATAGCATACCAGATCTTTCTCGCGC-----TCATGGAACTGCGTGCTCGGC 48248 Query 53922 TTTCTCTTTCGTATAGTGTATACAATCGTTCAAACTCGTCTCCCCAAACATTGTCCAATC 53981 || | ||||| | |||| |||||| || || | || | | ||| | Sbjct 48247 CGTCCTTCTCGTACTTTTCGTACAGCTCTTCAAATTCAGTGCCATAGACGTCGGCCAGAC 48188 Query 53982 CAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAA 54041 |||| | |||| |||||| | | |||||||| || ||| | | || || ||||||| Sbjct 48187 CAGGGGACTCATTCGGACAGAAAAGCGACCACTGGCCATCAGCTTCGACGCGCTTCATAA 48128 Query 54042 AGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGTTCCTCGTTTCCT 54100 |||| || || ||||| || || || || || || | | || ||||| || || || Sbjct 48127 AGAGGTCTGGGATCCATAG-GCCGTAGAAGAGGTCACGAGCCCTCTGTTCTTCCTTGCCA 48069 Query 54101 GTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATG 54160 |||||| |||||| || || | | ||||| | ||||| || ||||| || || Sbjct 48068 TGATTCTTGCGAAGATCAAGAAAGTCGAGGATATCTGCGTGCCAAGGCTCCAAATAGATA 48009 Query 54161 GTCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAA 54220 | | | || ||| || || || || || | || ||||| |||| ||| | Sbjct 48008 GCAAATGCACCCTTCCGCTTCCCGCCACCTTGGTCCACATACCTAGCTGTGTCATTGAAG 47949 Query 54221 ACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCA 54280 || | | ||| || | ||| || || || | ||| ||||| || ||| || | | Sbjct 47948 ACACGAAGCATAGGCACAATTCCGTTCGACGTACCGTTGGTACCACGGATGTA----CGA 47893 Query 54281 CT---GGCA-CGAATATTACTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAA 54336 || ||| || || || || || | || || || ||||| || || || | Sbjct 47892 CTTTGTGCATCGGATGTTGTGGATAGACAATCCAATGCCGCCTGCGGCCTTGGAAATGAT 47833 Query 54337 TGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAG 54396 ||||| || || | || ||||| ||||| || || || || |||| | || || Sbjct 47832 AGCGCAGCGCTTGAGAGTGTCATAAATGCCTTCAATGGAGTCCTCAGTCATAGTGAGAAG 47773 Query 54397 AAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTG 54456 || || || | ||| | || | || || ||||| |||| || || || || || Sbjct 47772 GAAGCAAGAGGATAGCTGGGGGCGGCAGGTGCCTGCATTGAATAGCGTTGGCGAGGCATG 47713 Query 54457 CGTAAACCATTTTTCAGAAAGTAGATTGTACGT---CTCGATAGCTGAGTCTATATCCCA 54513 || || || | || || || || || | ||| ||| || ||||| | Sbjct 47712 GGTGAAGAGCTTGTTGGACAGGGCATCATATGTGCCCAGGATGGCT---TCCATATCGCC 47656 Query 54514 TTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTT 54573 | ||||| || ||||| |||||||| | ||| ||||| || || || || ||||| Sbjct 47655 GAGGTGAATGCCGACTGCCACACGCATGAGCATATGCTGGGGCCTCTCCACAATCTTTCC 47596 Query 54574 GTTTATTTTCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAA 54633 ||| || |||| || || |||||||| ||||| ||||| |||| || ||||| Sbjct 47595 GTTGATGCGGAGCAGATACGAGCGCTCCAAAGTCTTAAATCCAAAGTAGTCATACGAAAA 47536 Query 54634 GTCTCGTTCGTAAATAAT 54651 || | ||||| ||||| Sbjct 47535 ATCCCTGTCGTAGATAAT 47518 >seq898 Length=425369 Score = 82.4 bits (90), Expect = 9e-11 Identities = 149/210 (71%), Gaps = 6/210 (3%) Strand=Plus/Plus Query 24131 CAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGT 24190 || ||| ||| ||||| || | || ||||| | | || | |||||| || || || Sbjct 413338 CAGACAGGCGTGGTCGCAATGCAACCCTTCGTCACGAGAGATGAGTTCGTTAGAGAAGGT 413397 Query 24191 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAAT-GATCCAGAAA 24249 ||| || ||||| | ||||||||| || || | || |||| |||||| || || || | Sbjct 413398 GAGGCCCGGCATCAAGCCACGCTTCTTGAGGTAGAAAATGG-CGCAAAAAGAGCCCGAGA 413456 Query 24250 AGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGCGCTGTCAT 24309 ||||||| || || || || |||||||| | |||| ||| | ||| || |||| | Sbjct 413457 AGAAAATGCCCTCCACGGCGGCAAAGGCCACGAGTCGCTCTGCG-AACGAGCCCTGTGAG 413515 Query 24310 GTA-TCCA-CTTTTGAGCCCAATCGGCCTT 24337 | | |||| | || |||||||||||||| Sbjct 413516 GAAATCCAGCGAATG-GCCCAATCGGCCTT 413544 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593714727672480