Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chondrus_20crispus_20[genbank_20GCA_5F000350225.2_202013-05-22] 926 sequences; 104,980,420 total letters Query= NC_001650.2 Length=184439 Score E Sequences producing significant alignments: (Bits) Value seq513 176 5e-39 >seq513 Length=248591 Score = 176 bits (194), Expect = 5e-39 Identities = 530/809 (66%), Gaps = 17/809 (2%) Strand=Plus/Minus Query 145540 ACCGCCATCTCCATGGGGATGGCCGCGTGGGGGTGGTAGCCCTCCAGCGCAAAGTCCTCC 145599 |||||||||| ||| | ||| | ||| || |||| ||||| || | ||||| || Sbjct 25617 ACCGCCATCTTCATCGCGATCTTCTTGTGCGGACGGTACCCCTCAAGTGTCAAGTCTTCG 25558 Query 145600 GCCCTGAAGTCATCTATGTCCTCCACCCGCCTCAGGATCCTGAGCCTGGGAAAGGGCCGG 145659 | ||||| || || |||| ||||| | || || || ||||| |||| | Sbjct 25557 AACGAAAAGTCTTCAAT---CTCCCCCCGCTCCCTAATGCTCAGTTGTGGAAACGGCCTG 25501 Query 145660 GGGCTCCTGGTCAGCTGGAGCTTCAGGGGCTCCACGTGGTTGAGGTAGACGTGCGCGTCC 145719 || |||| | ||| | |||| | |||||| |||||| ||||| || || ||| Sbjct 25500 GGCTTCCTCTGTACCTGTTCCCTCAGCGCCTCCACATGGTTGTTATAGACATGGGCATCC 25441 Query 145720 CCCAGGACGTGGATGAAGTCCCCGGGCTCGAGGCCCGTGAGGTGGGCGACCATGTAGGTC 145779 || || || | |||||||| ||| | || || | | || | || | | ||| Sbjct 25440 CCTAGCGTATGTACAAAGTCCCCTGGCCTCAAACCAGTCACTTTTGCAATCAAGCACGTC 25381 Query 145780 AGCAGGGAGTAGCTGGCTATGTTGAAGGGCACCCCCAGCCCCATGTCCCCCGAGCGCTGG 145839 ||||| | |||||| || |||||||| ||||| || || ||||| || | |||||| Sbjct 25380 AGCAGCGCGTAGCTCGCAATGTTGAACGGCACGCCGAGGCCCATATCGCAACTACGCTGG 25321 Query 145840 TACAGCTGGCAGGAGAGCTCCCCGCCCGCCACGTAGAACTGGCACAGGAGGTGGCAGGGC 145899 |||| |||||| || ||||| || ||| ||||||||||| ||| || ||||| || Sbjct 25320 TACATCTGGCATGAAAGCTCGCCATTCGCAACGTAGAACTGCGCCAGCAGATGGCATGGT 25261 Query 145900 GGCAGGGCCATGGCGGGCAGGT--CCGCCGGGTTCCAGGCGGTGAGGACGAGCCTCCTGC 145957 || || ||||| | || ||| || | |||||||| || | |||| || || || | Sbjct 25260 GGTAGCGCCAT--CTGGTCGGTCGCCACGGGGTTCCACGCAGACAGGAGGATCCGCC-GA 25204 Query 145958 TC-TCGGGGTTCCTCTTGATCTCCCCTATCAGGTCCCTGAGCTGGTCCACGCCCTGCCCC 146016 || | ||||| |||| | | |||| ||| | ||||| || |||| || Sbjct 25203 TCATTCGGGTTGTTCTTCACTGTATCGATCACCTCCTTCAGCTGATCTCTCCCCTTTCCT 25144 Query 146017 CGGTAATCTGTCTTGGA-GTCCACGTACGCGGCCCCGAAGTGCCTCCACTGGAACCCGTA 146075 ||||| | | || | || ||| | ||||| ||||||| ||| || ||||| || Sbjct 25143 GCATAATCCG-CGTGCATATCTGTGTATTCCGCCCCAAAGTGCCGCCATTGAAACCCATA 25085 Query 146076 GACGGGCCCCAGGTCCCCGGGCTCCCTGTGCCCCAGCCCGGCCCGGGCGAGGAAGTCCCG 146135 || || |||||||| || |||||| | | | |||| | | || || || | Sbjct 25084 CACTGGACCCAGGTCGCCCACCTCCCTCTCCGGAAACCCGCGCGTATCCAGAAACTCTCT 25025 Query 146136 GGACCCGTTGGCGTCCCAGATCTTGACGCCCCTCGCGGAGAGCTCATTGGAGTCCGTGGA 146195 |||||||| ||||||| || | || ||| | || ||||| || || || ||| Sbjct 25024 CGACCCGTTCCCGTCCCATATATGCACACCCTTTTTGGCGAGCTTGTTTGAATCGGTGCT 24965 Query 146196 CCCCCTGATGAACCAGAGCAGCTCTTCGAGGACCCCCCTCCAGAAGACCCTCTTGGTGGT 146255 ||| ||| ||||||| || ||| || || | | ||| || |||| ||| || || Sbjct 24964 TCCCTGGATAAACCAGAACAACTCCTCTGCCACGGCGCGCCAAAACACCCGCTTCGTCGT 24905 Query 146256 CAGCAGGGGGAACTGGCCCCGCA---GGGAGTACTTGGCCTGGTCCCCGAAGACGGACAG 146312 || || || ||| | ||||| | || | | || | ||||| ||||| | Sbjct 24904 CAATAGCGGAAACGAGTGCCGCAAATCGAAGCGCAT---TTGTGCGCCGAACACGGATAT 24848 Query 146313 GGTGCCCACGCCCGTCCTGTCCCCCCTGC 146341 || ||||| || || | ||||||| ||| Sbjct 24847 CGTCCCCACACCGGTACGGTCCCCCTTGC 24819 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 590069969861040