Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chondrus_20crispus_20[genbank_20GCA_5F000350225.2_202013-05-22] 926 sequences; 104,980,420 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq135 107 2e-18 >seq135 Length=363025 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 20947 TTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCG 21006 |||| || || || | || |||| ||| | ||| ||||||||||| ||||| ||||| | Sbjct 298627 TTCCTCCACGGAGACGAAGAACCAAATGAAGAGTAGACTCCTTTTGGATGTTGTAGTCAG 298686 Query 21007 CCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGG 21066 || || | ||||||| ||||| ||||| || | ||||| ||||||||||| | Sbjct 298687 AGAGAGTGCGACCGTCCTCGAGCTGCTTGCCAGCGAAGATAAGCCTCTGCTGGTCAGGCG 298746 Query 21067 GCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCG 21126 | | ||| |||||||| ||||| ||||| | | | ||| || || ||| Sbjct 298747 GGATGCCCTCCTTGTCCTGAATCTTCGTCTTCACATTCTCAATAGTGTCCGAGGCCTCAA 298806 Query 21127 TTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||| ||| || ||||| || || || || |||||||| || ||||| Sbjct 298807 CCTCCAGGGTGATAGTCTTTCCAGTCAAGGTCTTGACAAAAATCTGCAT 298855 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 ||||||| || | |||||| ||||| |||||||| || || | ||||| || ||||| Sbjct 298872 AGCACCAAGTGGAGAGTGGATTCCTTCTGAATGTTGTAATCGGAAAGGGTGCGGCCGTCC 298931 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 || ||||| || || || | || | | ||||||||| || | ||||||||||| Sbjct 298932 TCGAGCTGCTTTCCAGCGAAGATCAAACGCTGCTGGTCAGGCGGGATTCCTTCCTTGTCC 298991 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 ||||| ||||| | | | || || | ||| |||| ||| |||||| Sbjct 298992 TGAATCTTAGTCTTCACGTTCTCAATGGTGTCCGAAGACTCGACCTCCAGGGTGATGGTC 299051 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||||||| | || ||||| || || ||||| Sbjct 299052 TTGCCGGTGAGGGTCTTGACGAAAATCTGCAT 299083 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 || || | ||| | ||| |||||||| || ||||| ||||| | ||||| | |||| Sbjct 299100 AGGACGAGATGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGTCCGTCT 299159 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 || ||||| || || || | || || ||||||||||| ||| | |||||||||||| Sbjct 299160 TCAAGCTGCTTACCGGCGAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCTTCCTTGTCC 299219 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 ||||| ||||| | ||| || || || ||| || | || |||||| Sbjct 299220 TGAATCTTCGTCTTCACATTCTCGATGGTGTCCGAGGACTCGACCTCGAGAGTGATGGTC 299279 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || ||||| | || ||||| || || ||||| Sbjct 299280 TTCCCGGTGAGGGTCTTGACGAAAATCTGCAT 299311 Score = 82.4 bits (90), Expect = 6e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 ||||||| ||| | || || ||||| || ||||| ||||| || || | | ||| Sbjct 298416 AGCACCAGATGGAGGGTAGATTCCTTCTGGATGTTGTAGTCGTTCAACGTACGTCCATCC 298475 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 || ||||| ||||| || | ||||| ||||||||||| || | || ||||| || Sbjct 298476 TCGAGCTGCTTGCCGGCGAAGATAAGCCTCTGCTGGTCAGGTGGGATACCCTCCTTATCC 298535 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 ||||| ||||| | | | ||| || | ||| || | |||||| ||| Sbjct 298536 TGAATCTTAGTCTTCACGTTCTCAATAGTGTCCGAAGACTCGACCTCAAGGGTAATTGTC 298595 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCATT 21176 ||||| |||| ||| |||||||| || |||||| Sbjct 298596 TTGCCTGTTAGCGTCTTGACAAAAATCTGCATT 298628 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422254434541016