Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chondrus_20crispus_20[genbank_20GCA_5F000350225.2_202013-05-22] 926 sequences; 104,980,420 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq387 187 3e-42 seq898 149 6e-31 seq135 143 3e-29 seq210 136 4e-27 >seq387 Length=288413 Score = 187 bits (206), Expect = 3e-42 Identities = 364/527 (69%), Gaps = 17/527 (3%) Strand=Plus/Minus Query 116661 AGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTCCA--AGGACACGAGCGACTGGGA 116718 |||| ||||| ||||||| ||||| || || || ||| |||| | ||| ||| | Sbjct 56759 AGGCATCGTTTTGGACCGCAGAGGAAGTTGATCT--CCAGCAGGATCTGCACGATTGGAA 56702 Query 116719 GCGCTTGAACGACAACGAGCGCCATTTCATCAAGCACGTGCTGGCCTTTTTCGCCGCCAG 116778 || | || ||| ||| ||||| ||| | | | || || |||||||||||||| Sbjct 56701 TGGCCTCAAGGACGCCGAACGCCACTTCCTGACTCGTGTCCTCGCCTTTTTCGCCGCATC 56642 Query 116779 CGACGGCATCGTCAACGAGAATCTGGTCGAGCG-TTTCGCTCAGGAGGTGCAGGTGGCCG 116837 ||||| || || || || || ||||||| ||| || ||| | || ||| | | | Sbjct 56641 TGACGGAATTGTTTTGGAAAACCTTATCGAGCGCTTTTGCACAG-ACGTCCAGCTTCCAG 56583 Query 116838 AGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTGCACTCGGAAATGTATT 116897 | ||||| || || || | ||||||| |||||||||||||||||||||||||||||||| Sbjct 56582 AAGCGCGCTGTTTTTATGCCTTTCAGGCCGCCATGGAGAACGTGCACTCGGAAATGTATT 56523 Query 116898 CGACCCTCATCGACACGTACGT-GC--GCTCTTCGGAGGAGAAGCTCCGTTTGTTGAACG 116954 | || || || || || | || | || ||||| ||| || |||||| | Sbjct 56522 CACTACTGATTGATACATATATAGCCGACCCTGCGGAGAAGACACT---TTTGTTTGCGG 56466 Query 116955 CCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCG 117014 || | |||| || |||||||| | ||||| |||||||| || | ||||| Sbjct 56465 CCGTGGAGAGCATTCCGTGCGTGCGGAAAAAGGCGGAGTGGGCTCTCAGGTGGAT---TA 56409 Query 117015 GCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCT 117074 || || || | || | || | || ||||| || || ||||| ||||| | |||| Sbjct 56408 GCTCCGACGCAGGGTTTGTGGAAAGGCTCGTGGCGTTTGCAGCCGTGGAGGGGATTTTCT 56349 Query 117075 TTTC-GGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTG 117133 |||| ||| |||| | |||| | |||||| | ||||| | || |||||||| || || Sbjct 56348 TTTCGGGGTCGTTTTG-CGCCGTGTTTTGGATGAAGAAGAGGGGGCTCATGCCTGGGCTC 56290 Query 117134 ACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGA 117180 || ||| ||||||||| || || |||| || || ||||||| || Sbjct 56289 ACCTTCTCCAACGAGCTTATATCACGGGATGAAGGGTTGCATTGTGA 56243 >seq898 Length=425369 Score = 149 bits (164), Expect = 6e-31 Identities = 194/268 (72%), Gaps = 3/268 (1%) Strand=Plus/Minus Query 116928 CGGAGGAGAAGCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGG 116987 ||| |||||||| || ||||| | |||||||| ||| || || ||| |||| Sbjct 413600 CGGTGGAGAAGCAGCGATTGTTCAGGGCCATCGAAGAGATTCCCTGTGTCGCTCGCAAGG 413541 Query 116988 CCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGG 117047 |||| ||||| | |||||||| || | ||| | | |||| ||||| || |||| Sbjct 413540 CCGATTGGGCCATTCGCTGGATTTCCTC---ACAGGGCTCGTTCGCAGAGCGACTCGTGG 413484 Query 117048 CCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCA 117107 |||| || ||||| |||||| | ||||| |||||| ||| |||||| || | |||| Sbjct 413483 CCTTTGCCGCCGTGGAGGGCATTTTCTTCTCGGGCTCTTTTTGCGCCATTTTCTACCTCA 413424 Query 117108 AGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGG 117167 |||| || ||| | ||||| ||||| || ||| ||||| |||||||| | ||||| | Sbjct 413423 AGAAGCGTGGCTTGATGCCGGGCCTCACCTTCTCTAACGAACTCATCTCTCGTGACGAAG 413364 Query 117168 GTCTGCATTGCGACTTTGCCTGTTTGCT 117195 | ||||||||||| |||||| |||| Sbjct 413363 GGTTGCATTGCGACCACGCCTGTCTGCT 413336 >seq135 Length=363025 Score = 143 bits (158), Expect = 3e-29 Identities = 157/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || ||||| || || |||||||| |||| ||||| || | Sbjct 299311 ATGCAGATTTTCGTCAAGACCCTCACCGGGAAGACCATCACTCTCGAGGTCGAGTCCTCG 299252 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | | ||| || |||| ||||| || ||||||||| | |||||| Sbjct 299251 GACACCATCGAGAATGTGAAGACGAAGATTCAGGACAAGGAAGGCATCCCCCCTGACCAG 299192 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || | ||||||| ||| || || ||||| || |||| ||||||||| |||||||||| Sbjct 299191 CAGAGGCTCATCTTCGCCGGTAAGCAGCTTGAAGACGGACGCACCCTCTCCGACTACAAC 299132 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 |||||||||||| | || || ||||| || Sbjct 299131 ATCCAGAAGGAGTCTACTCTCCATCTCGT 299103 Score = 132 bits (146), Expect = 5e-26 Identities = 161/217 (74%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || ||||||||||| ||||||||| | || ||||| | | Sbjct 298399 ATGCAGATCTTTGTCAAGACCCTCACGGGCAAGACCATCACCCTTGAGGTCGAGTCTTCG 298340 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| | ||| || |||| ||||| ||||| ||||| | ||||| Sbjct 298339 GACACCATCGAGAACGTT-AAGACTAAGATTCAGGACAAGGAGGGTATCCCGCCTGACCA 298281 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | || |||| ||| ||||| ||||| || || | ||| || | ||||||||||| Sbjct 298280 GCAGAGGCTTATCTTCGCCGGCAAGCAGCTCGAGGATGGGCGTACGTTGAACGACTACAA 298221 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGC 40905 |||||||||||| | || || ||||| ||| | ||| Sbjct 298220 CATCCAGAAGGAATCTACCCTCCATCTGGTGCTTCGC 298184 Score = 125 bits (138), Expect = 7e-24 Identities = 156/211 (74%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || ||||||||||| ||||||||| | || ||||| | | Sbjct 297943 ATGCAGATCTTTGTCAAGACCCTCACGGGCAAGACCATCACCCTGGAGGTCGAGTCTTCG 297884 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| | ||| || |||| ||||| ||||| ||||| | || || Sbjct 297883 GACACCATCGAGAACGTT-AAGACTAAGATTCAGGACAAGGAGGGTATCCCGCCTGATCA 297825 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | || |||| ||| ||||| ||||| || || | ||| || | ||||||||||| Sbjct 297824 GCAGAGGCTTATCTTCGCCGGCAAGCAGCTCGAGGATGGGCGTACGTTGAACGACTACAA 297765 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTG 40899 |||||||||||| | || || ||||| ||| Sbjct 297764 CATCCAGAAGGAATCTACCCTCCATCTGGTG 297734 Score = 123 bits (136), Expect = 3e-23 Identities = 159/217 (73%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || ||||||||||| ||||||||| | || ||||| | | Sbjct 298171 ATGCAGATCTTTGTCAAGACCCTCACGGGCAAGACCATCACCCTGGAGGTCGAGTCTTCG 298112 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| | ||| || |||| ||||| ||||| ||||| | || || Sbjct 298111 GACACCATCGAGAACG-TGAAGACTAAGATTCAGGACAAGGAGGGTATCCCACCTGATCA 298053 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | || |||| ||| || || ||||| || || | ||| || | ||||||||||| Sbjct 298052 GCAGAGGCTTATCTTCGCTGGTAAGCAGCTCGAGGATGGGCGTACGTTGAACGACTACAA 297993 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGC 40905 |||||||||||| | || || ||||| ||| | ||| Sbjct 297992 CATCCAGAAGGAATCTACTCTCCATCTGGTGCTTCGC 297956 Score = 109 bits (120), Expect = 6e-19 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 |||||| || || || || ||||| || ||||| || || ||| | || ||||| | | Sbjct 298628 AATGCAGATTTTTGTCAAGACGCTAACAGGCAAGACAATTACCCTTGAGGTCGAGTCTTC 298569 Query 40749 CGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807 |||| | | |||| | ||| || |||| || || ||||| ||||| | |||| Sbjct 298568 GGACACTATTGAGAACG-TGAAGACTAAGATTCAGGATAAGGAGGGTATCCCACCTGACC 298510 Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867 |||| | || |||| ||| ||||| ||||| || || | || || | |||||||||| Sbjct 298509 AGCAGAGGCTTATCTTCGCCGGCAAGCAGCTCGAGGATGGACGTACGTTGAACGACTACA 298450 Query 40868 ACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||||||||| | || || ||||| ||| | ||| | | ||||| Sbjct 298449 ACATCCAGAAGGAATCTACCCTCCATCTGGTGCTTCGCCTTCGCGGCGG 298401 Score = 102 bits (112), Expect = 8e-17 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || | || || || || |||||| | || || || ||| | Sbjct 298855 ATGCAGATTTTTGTCAAGACCTTGACTGGAAAGACTATCACCCTGGAGGTTGAGGCCTCG 298796 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | ||| || |||| ||||| ||||||||||| | |||||| Sbjct 298795 GACACTATTGAGAATGTGAAGACGAAGATTCAGGACAAGGAGGGCATCCCGCCTGACCAG 298736 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || | || |||| ||| ||||| ||||| || |||| ||||| ||| ||||||||| Sbjct 298735 CAGAGGCTTATCTTCGCTGGCAAGCAGCTCGAGGACGGTCGCACTCTCTCTGACTACAAC 298676 Query 40870 ATCCAGAAGGAGGCCACGCTGCAT 40893 ||||| |||||| | || || ||| Sbjct 298675 ATCCAAAAGGAGTCTACTCTTCAT 298652 >seq210 Length=341256 Score = 136 bits (150), Expect = 4e-27 Identities = 165/222 (74%), Gaps = 2/222 (1%) Strand=Plus/Minus Query 40684 CGAAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAA 40743 ||||||||||| || || || || || |||||||| || || || || | || ||||| Sbjct 96594 CGAAAAATGCAGATCTTTGTGAAGACCCTCACGGGTAAGACGATTACTCTTGAGGTCGAG 96535 Query 40744 GCCACCGACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGC 40802 ||| | || | | | || || | | ||| || || | |||||||||||||| || | Sbjct 96534 GCCTCTGATAACATCGCGAATG-TGAAGACTAAGATCCAGGACAAAGAGGGCATTCCTCC 96476 Query 40803 GGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGA 40862 |||||||| || ||||||| ||| ||||| ||||| || || || ||||| || || Sbjct 96475 CGACCAGCAGCGTCTCATCTTCGCTGGCAAGCAGCTCGAGGATGATCGCACTCTGTCAGA 96416 Query 40863 CTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 |||||||||||||||||| | || || || || |||||||| Sbjct 96415 CTACAACATCCAGAAGGAATCGACTCTTCACCTTGTGTTGCG 96374 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515213236337760