Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chondrus_20crispus_20[genbank_20GCA_5F000350225.2_202013-05-22]
926 sequences; 104,980,420 total letters
Query= NC_001993.1
Length=236120
Score E
Sequences producing significant alignments: (Bits) Value
seq135 87.8 3e-12
>seq135
Length=363025
Score = 87.8 bits (96), Expect = 3e-12
Identities = 158/231 (68%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597
|||||| || ||| | ||||| ||||||||||| || || || | ||| | || |
Sbjct 298628 AATGCAGATTTTTGTCAAGACGCTAACAGGCAAGACAATTACCCTTGAGGTCGAGTCTTC 298569
Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657
|| || ||| || | || || ||||| ||||| || ||||| |||||||| ||
Sbjct 298568 GGACACTATTGAGAACGTGAAGACTAAGATTCAGGATAAGGAGGGTATCCCACCTGACCA 298509
Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717
|| |||||||| || || || || || | |||||| | || || || | || || ||
Sbjct 298508 GCAGAGGCTTATCTTCGCCGGCAAGCAGCTCGAGGATGGACGTACGTTGAACGACTACAA 298449
Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768
|| || || ||||| || | ||| |||| | || | || || |||||
Sbjct 298448 CATCCAGAAGGAATCTACCCTCCATCTGGTGCTTCGCCTTCGCGGCGGTAT 298398
Score = 84.2 bits (92), Expect = 3e-11
Identities = 106/146 (73%), Gaps = 0/146 (0%)
Strand=Plus/Minus
Query 124623 AAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAA 124682
|| ||||| || || || ||||| ||||||||||| || |||||||| || || || ||
Sbjct 298087 AAGATTCAGGACAAGGAGGGTATCCCACCTGATCAGCAGAGGCTTATCTTCGCTGGTAAG 298028
Query 124683 CAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCAT 124742
|| | |||||| | || || || | || || || || || || ||||| ||| | |||
Sbjct 298027 CAGCTCGAGGATGGGCGTACGTTGAACGACTACAACATCCAGAAGGAATCTACTCTCCAT 297968
Query 124743 TTGGTTTTACGTTTACGAGGTGGTAT 124768
|||| | || | || ||||||||
Sbjct 297967 CTGGTGCTTCGCCTTCGCGGTGGTAT 297942
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 755447255596800
| Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |