Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chondrus_20crispus_20[genbank_20GCA_5F000350225.2_202013-05-22] 926 sequences; 104,980,420 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq135 143 2e-29 seq210 131 1e-25 >seq135 Length=363025 Score = 143 bits (158), Expect = 2e-29 Identities = 169/229 (74%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||| ||||||| | | ||||| |||| ||||| || || || |||||||| ||| Sbjct 297715 TACCACCGCGTAGACGAAGCACCAGATGGAGGGTAGATTCCTTCTGGATGTTGTAGTCGT 297774 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 ||| || ||| |||||||||||| || || ||| |||| || | ||||||||| || | Sbjct 297775 TCAACGTACGCCCATCCTCGAGCTGCTTGCCGGCGAAGATAAGCCTCTGCTGATCAGGCG 297834 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689 | || ||||||||||| ||| || ||||| | |||| |||||||| ||||| Sbjct 297835 GGATACCCTCCTTGTCCTGAATCTTAGTCTTAACGTTCTCGATGGTGTCCGAAGACTCGA 297894 Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||| | ||| | || ||||| || || || || ||||| |||||||| Sbjct 297895 CCTCCAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACAAAGATCTGCAT 297943 Score = 141 bits (156), Expect = 8e-29 Identities = 171/233 (73%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||| || || | | || ||||||||||| || || || || ||||||||||||||| Sbjct 298855 TACCACCACGAAGACGCAGCACCAAGTGGAGAGTGGATTCCTTCTGAATGTTGTAATCGG 298914 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 | ||||| ||||||||||| ||||||||| |||| | ||||||||| || || | Sbjct 298915 AAAGGGTGCGGCCGTCCTCGAGCTGCTTTCCAGCGAAGATCAAACGCTGCTGGTCAGGCG 298974 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689 | || || |||||||| ||| || || || | || | |||||||| ||||| Sbjct 298975 GGATTCCTTCCTTGTCCTGAATCTTAGTCTTCACGTTCTCAATGGTGTCCGAAGACTCGA 299034 Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 118742 |||| | ||| | || |||||||| || || || || |||||||||||| || Sbjct 299035 CCTCCAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAAATCTGCATGCCT 299087 Score = 138 bits (152), Expect = 1e-27 Identities = 168/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||| ||||| | | | ||||| |||| ||||| || || || |||||||| ||| Sbjct 297943 TACCACCGCGAAGGCGAAGCACCAGATGGAGAGTAGATTCCTTCTGGATGTTGTAGTCGT 298002 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 ||| || ||| |||||||||||| || |||||| |||| || | ||||||||| || | Sbjct 298003 TCAACGTACGCCCATCCTCGAGCTGCTTACCAGCGAAGATAAGCCTCTGCTGATCAGGTG 298062 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689 | || ||||||||||| ||| || || || | |||| |||||||| ||||| Sbjct 298063 GGATACCCTCCTTGTCCTGAATCTTAGTCTTCACGTTCTCGATGGTGTCCGAAGACTCGA 298122 Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||| | ||| | || ||||| || || || || ||||| |||||||| Sbjct 298123 CCTCCAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACAAAGATCTGCAT 298171 Score = 134 bits (148), Expect = 1e-26 Identities = 167/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||| ||||| | | | ||||| |||| ||||| || || || |||||||| ||| Sbjct 298171 TACCACCGCGAAGGCGAAGCACCAGATGGAGGGTAGATTCCTTCTGGATGTTGTAGTCGT 298230 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 ||| || ||| |||||||||||| || || ||| |||| || | |||||| || || | Sbjct 298231 TCAACGTACGCCCATCCTCGAGCTGCTTGCCGGCGAAGATAAGCCTCTGCTGGTCAGGCG 298290 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689 | || ||||||||||| ||| || ||||| | |||| |||||||| ||||| Sbjct 298291 GGATACCCTCCTTGTCCTGAATCTTAGTCTTAACGTTCTCGATGGTGTCCGAAGACTCGA 298350 Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||| | ||| | || ||||| || || || || ||||| |||||||| Sbjct 298351 CCTCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACAAAGATCTGCAT 298399 Score = 120 bits (132), Expect = 3e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 ||||| || | |||||||| ||||| |||||||| || | |||||| |||||| Sbjct 298647 ACCAAATGAAGAGTAGACTCCTTTTGGATGTTGTAGTCAGAGAGAGTGCGACCGTCCTCG 298706 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| || |||||| |||| || | |||||| || || || |||||||||||||| | Sbjct 298707 AGCTGCTTGCCAGCGAAGATAAGCCTCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGA 298766 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | || | ||||||| | ||| ||||| | ||| | || || Sbjct 298767 ATCTTCGTCTTCACATTCTCAATAGTGTCCGAGGCCTCAACCTCCAGGGTGATAGTCTTT 298826 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || |||| || || |||||||||||||| Sbjct 298827 CCAGTCAAGGTCTTGACAAAAATCTGCAT 298855 Score = 116 bits (128), Expect = 3e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||| ||||| | | | ||||| |||| ||||| || || || |||||||| ||| Sbjct 298399 TACCGCCGCGAAGGCGAAGCACCAGATGGAGGGTAGATTCCTTCTGGATGTTGTAGTCGT 298458 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 ||| || || |||||||||||| || || ||| |||| || | |||||| || || | Sbjct 298459 TCAACGTACGTCCATCCTCGAGCTGCTTGCCGGCGAAGATAAGCCTCTGCTGGTCAGGTG 298518 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689 | || |||||||| || ||| || || || | || | ||||||| ||||| Sbjct 298519 GGATACCCTCCTTATCCTGAATCTTAGTCTTCACGTTCTCAATAGTGTCCGAAGACTCGA 298578 Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||| | ||| | || ||||| || || || || |||||||||||||| Sbjct 298579 CCTCAAGGGTAATTGTCTTGCCTGTTAGCGTCTTGACAAAAATCTGCAT 298627 Score = 116 bits (128), Expect = 3e-21 Identities = 148/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 118536 TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGT 118595 |||| |||||||| || || |||||||| ||| | ||||| || || ||||| Sbjct 299109 TGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGTCCGTCTTCAAGCTGC 299168 Query 118596 TTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTT 118655 || || ||| ||||||| | |||||| || || || ||||| |||||||| ||| || Sbjct 299169 TTACCGGCGAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCTTCCTTGTCCTGAATCTTC 299228 Query 118656 TGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTC 118715 || || | |||| |||||||| | ||||||||||| || | || || ||||| Sbjct 299229 GTCTTCACATTCTCGATGGTGTCCGAGGACTCGACCTCGAGAGTGATGGTCTTCCCGGTG 299288 Query 118716 AGAGTTTTTACAAAAATCTGCATG 118739 || || || || |||||||||||| Sbjct 299289 AGGGTCTTGACGAAAATCTGCATG 299312 >seq210 Length=341256 Score = 131 bits (144), Expect = 1e-25 Identities = 169/230 (73%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 118511 ACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCT 118570 ||| ||||| | | |||||| | ||| | || || || || || |||||||| || Sbjct 96361 ACCACCGCGAAGACGCAACACAAGGTGAAGAGTCGATTCCTTCTGGATGTTGTAGTCTGA 96420 Query 118571 CATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGG 118630 || |||||| |||||||||||| || |||||| |||||||||||||||| |||||||| Sbjct 96421 CAGAGTGCGATCATCCTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCGGGAGG 96480 Query 118631 TATGCCCTCCTTGT-CTGTAATTTTTTGT-TTAACCTGTTCGACGGTGTCCGTGCTCTCG 118688 |||||||| |||| ||| | | || || || || | ||| | | || | | |||| Sbjct 96481 AATGCCCTCTTTGTCCTGGA--TCTTAGTCTTCACATTCGCGATGTTATCAGAGGCCTCG 96538 Query 118689 ACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||| | || | ||| || || || || || || ||||| |||||||| Sbjct 96539 ACCTCAAGAGTAATCGTCTTACCCGTGAGGGTCTTCACAAAGATCTGCAT 96588 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433825503952792