Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chondrus_20crispus_20[genbank_20GCA_5F000350225.2_202013-05-22] 926 sequences; 104,980,420 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq135 105 8e-18 seq210 104 3e-17 >seq135 Length=363025 Score = 105 bits (116), Expect = 8e-18 Identities = 155/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 ||||| |||||| || | ||| ||||| ||||| |||||||| | || || || | Sbjct 298868 ACGCAGCACCAAGTGGAGAGTGGATTCCTTCTGAATGTTGTAATCGGAAAGGGTGCGGCC 298927 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 ||| || |||||||| |||||||| || | ||||||||||| | ||| | | ||||| Sbjct 298928 GTCCTCGAGCTGCTTTCCAGCGAAGATCAAACGCTGCTGGTCAGGCGGGATTCCTTCCTT 298987 Query 43088 GTCCATGATTTTTTGT-TTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGA 43146 |||| ||| | || || || | || | | ||||| || || || || | |||| Sbjct 298988 GTCC-TGAATCTTAGTCTTCACGTTCTCAATGGTGTCCGAAGACTCGACCTCCAGGGTGA 299046 Query 43147 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 |||| ||||| || || ||||| || || || ||||| Sbjct 299047 TGGTCTTGCCGGTGAGGGTCTTGACGAAAATCTGCAT 299083 Score = 96.9 bits (106), Expect = 4e-15 Identities = 138/192 (72%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052 ||||| || || ||||| || || || ||| | || || ||||||||||||||||| Sbjct 297981 TCCTTCTGGATGTTGTAGTCGTTCAACGTACGCCCATCCTCGAGCTGCTTACCAGCGAAG 298040 Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGT-TTGAGCGT 43111 || || | |||||| || | || | | |||||||||| ||| | || || || | | Sbjct 298041 ATAAGCCTCTGCTGATCAGGTGGGATACCCTCCTTGTCC-TGAATCTTAGTCTTCACGTT 298099 Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | | | ||||| || || || || | |||||||| |||||||| || ||||| || Sbjct 298100 CTCGATGGTGTCCGAAGACTCGACCTCCAGGGTGATGGTCTTGCCCGTGAGGGTCTTGAC 298159 Query 43172 AAAGATTTGCAT 43183 |||||| ||||| Sbjct 298160 AAAGATCTGCAT 298171 Score = 93.3 bits (102), Expect = 5e-14 Identities = 138/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || ||||| || | || || || |||| || ||||||||||| ||||| Sbjct 299120 CTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGTCCGTCTTCAAGCTGCTTACCGGCGAA 299179 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGT-TTGAGCG 43110 ||||| | ||||||||| | || | || ||||||||| ||| | || || || | Sbjct 299180 GATGAGCCTCTGCTGGTCAGGGGGGATGCCTTCCTTGTCC-TGAATCTTCGTCTTCACAT 299238 Query 43111 TCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170 || | | ||||| || || || |||| |||||||| || || || || ||||| | Sbjct 299239 TCTCGATGGTGTCCGAGGACTCGACCTCGAGAGTGATGGTCTTCCCGGTGAGGGTCTTGA 299298 Query 43171 CAAAGATTTGCAT 43183 | || || ||||| Sbjct 299299 CGAAAATCTGCAT 299311 >seq210 Length=341256 Score = 104 bits (114), Expect = 3e-17 Identities = 140/195 (72%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052 ||||| || || ||||| || | |||||| || || || || |||||||| |||||||| Sbjct 96398 TCCTTCTGGATGTTGTAGTCTGACAGAGTGCGATCATCCTCGAGCTGCTTGCCAGCGAAG 96457 Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 43112 ||||| ||||||||||||| || | || ||| |||||| ||| || || | || Sbjct 96458 ATGAGACGCTGCTGGTCGGGAGGAATGCCCTCTTTGTCCTGGATCTTAGTCTTCACATTC 96517 Query 43113 GCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 43172 || | | || | || || || | || || || || ||||| || ||||| ||| Sbjct 96518 GCGATGTTATCAGAGGCCTCGACCTCAAGAGTAATCGTCTTACCCGTGAGGGTCTTCACA 96577 Query 43173 AAGATTTGCATTTTT 43187 ||||| ||||||||| Sbjct 96578 AAGATCTGCATTTTT 96592 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571810981211280