Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chondrus_20crispus_20[genbank_20GCA_5F000350225.2_202013-05-22] 926 sequences; 104,980,420 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq210 122 6e-23 seq135 116 2e-21 >seq210 Length=341256 Score = 122 bits (134), Expect = 6e-23 Identities = 168/235 (71%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || ||||| || | || ||| ||||| | ||| ||| ||||| ||||||||||| ||| Sbjct 96362 CCACCGCGAAGACGCAACACAAGGTGAAGAGTCGATTCCTTCTGGATGTTGTAGTCTGAC 96421 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || || || || || | ||||||||| ||||| ||||| |||||||||||| || Sbjct 96422 AGAGTGCGATCATCCTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCGGGAGGA 96481 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || ||| ||||| ||||| ||| | || || || ||| | | ||||| Sbjct 96482 ATGCCCTCTTTGTCCTGGATCTTAGTCTTCACATTCGCGATGTTATCAGAGGCCTCGACC 96541 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATCGCTCGAA 34397 || | || || || || || ||||| || ||||||||||||||||| ||||| Sbjct 96542 TCAAGAGTAATCGTCTTACCCGTGAGGGTCTTCACAAAGATCTGCATTTTTCGAA 96596 >seq135 Length=363025 Score = 116 bits (128), Expect = 2e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || ||||| || | |||||||| || | ||| ||| ||||| |||||||||||| | Sbjct 297717 CCACCGCGTAGACGAAGCACCAGATGGAGGGTAGATTCCTTCTGGATGTTGTAGTCGTTC 297776 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC-GACGGG 34281 | | ||| | || || | ||||||||| ||||| || |||| |||||| || | |||| Sbjct 297777 AACGTACGCCCATCCTCGAGCTGCTTGCCGGCGAAGATAAGCCTCTGCTGATCAGGCGGG 297836 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341 | | ||||||||| ||||| ||| | | | || | || | || ||||| Sbjct 297837 -ATACCCTCCTTGTCCTGAATCTTAGTCTTAACGTTCTCGATGGTGTCCGAAGACTCGAC 297895 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| |||||||| ||||| ||||| || || |||||||||||||| Sbjct 297896 CTCCAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACAAAGATCTGCAT 297943 Score = 116 bits (128), Expect = 2e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || ||||| || | |||||||| || | ||| ||| ||||| |||||||||||| | Sbjct 298173 CCACCGCGAAGGCGAAGCACCAGATGGAGGGTAGATTCCTTCTGGATGTTGTAGTCGTTC 298232 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC-GACGGG 34281 | | ||| | || || | ||||||||| ||||| || |||| ||||||||| | |||| Sbjct 298233 AACGTACGCCCATCCTCGAGCTGCTTGCCGGCGAAGATAAGCCTCTGCTGGTCAGGCGGG 298292 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341 | | ||||||||| ||||| ||| | | | || | || | || ||||| Sbjct 298293 -ATACCCTCCTTGTCCTGAATCTTAGTCTTAACGTTCTCGATGGTGTCCGAAGACTCGAC 298351 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | |||||||| ||||| ||||| || || |||||||||||||| Sbjct 298352 CTCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACAAAGATCTGCAT 298399 Score = 113 bits (124), Expect = 3e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || ||||| || | |||||||| || | |||| ||| ||||| |||||||||||| | Sbjct 297945 CCACCGCGAAGGCGAAGCACCAGATGGAGAGTAGATTCCTTCTGGATGTTGTAGTCGTTC 298004 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 | | ||| | || || | |||||| || ||||| || |||| |||||| || || Sbjct 298005 AACGTACGCCCATCCTCGAGCTGCTTACCAGCGAAGATAAGCCTCTGCTGATCAGGTGGG 298064 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | | ||||||||| ||||| ||| | | | || | || | || ||||| Sbjct 298065 ATACCCTCCTTGTCCTGAATCTTAGTCTTCACGTTCTCGATGGTGTCCGAAGACTCGACC 298124 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| |||||||| ||||| ||||| || || |||||||||||||| Sbjct 298125 TCCAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACAAAGATCTGCAT 298171 Score = 107 bits (118), Expect = 1e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || || || | |||||||| ||| | ||| ||| ||||| |||||||| ||||| Sbjct 298857 CCACCACGAAGACGCAGCACCAAGTGGAGAGTGGATTCCTTCTGAATGTTGTAATCGGAA 298916 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC-GACGGG 34281 || ||| |||| || | |||||| || ||||| || | ||||||||||| | |||| Sbjct 298917 AGGGTGCGGCCGTCCTCGAGCTGCTTTCCAGCGAAGATCAAACGCTGCTGGTCAGGCGGG 298976 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341 | | |||||||| ||||| ||| | | | || | || | || ||||| Sbjct 298977 -ATTCCTTCCTTGTCCTGAATCTTAGTCTTCACGTTCTCAATGGTGTCCGAAGACTCGAC 299035 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| |||||||| ||||||||||| || || || || |||||||| Sbjct 299036 CTCCAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAAATCTGCAT 299083 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 || || || || | |||| || ||||| |||||||||||||| || || |||| Sbjct 299100 AGGACGAGATGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGTCCGTCT 299159 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 || | |||||| || ||||| ||||||| ||||||||| ||| | || |||||||| Sbjct 299160 TCAAGCTGCTTACCGGCGAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCTTCCTTGTCC 299219 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||| ||| | || | || | || | || ||||| || | |||||||| Sbjct 299220 TGAATCTTCGTCTTCACATTCTCGATGGTGTCCGAGGACTCGACCTCGAGAGTGATGGTC 299279 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || |||||||| || || || || |||||||| Sbjct 299280 TTCCCGGTGAGGGTCTTGACGAAAATCTGCAT 299311 Score = 95.1 bits (104), Expect = 8e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 |||||||| || | |||||||| || | ||| ||| ||||| |||||||||||| | Sbjct 298401 CCGCCGCGAAGGCGAAGCACCAGATGGAGGGTAGATTCCTTCTGGATGTTGTAGTCGTTC 298460 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 | | ||| | || || | ||||||||| ||||| || |||| ||||||||| || Sbjct 298461 AACGTACGTCCATCCTCGAGCTGCTTGCCGGCGAAGATAAGCCTCTGCTGGTCAGGTGGG 298520 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | | |||||| || ||||| ||| | | | || | || | || ||||| Sbjct 298521 ATACCCTCCTTATCCTGAATCTTAGTCTTCACGTTCTCAATAGTGTCCGAAGACTCGACC 298580 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | || || || ||||| || || || || ||||| |||||||| Sbjct 298581 TCAAGGGTAATTGTCTTGCCTGTTAGCGTCTTGACAAAAATCTGCAT 298627 Score = 82.4 bits (90), Expect = 5e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221 ||| || || || | || |||| || | |||| || || || ||||||||||| || Sbjct 298628 TCCTCCACGGAGACGAAGAACCAAATGAAGAGTAGACTCCTTTTGGATGTTGTAGTCAGA 298687 Query 34222 CAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC-GACGG 34280 || || |||| || | ||||||||| ||||| || |||| ||||||||| | ||| Sbjct 298688 GAGAGTGCGACCGTCCTCGAGCTGCTTGCCAGCGAAGATAAGCCTCTGCTGGTCAGGCGG 298747 Query 34281 GCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGA 34340 | | || ||||||||| ||||| ||| | || | || | || | | || | Sbjct 298748 G-ATGCCCTCCTTGTCCTGAATCTTCGTCTTCACATTCTCAATAGTGTCCGAGGCCTCAA 298806 Query 34341 CGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 | |||| ||||| || || || || | || || ||||| |||||||| Sbjct 298807 CCTCCAGGGTGATAGTCTTTCCAGTCAAGGTCTTGACAAAAATCTGCAT 298855 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323068353930560