Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chondrus_20crispus_20[genbank_20GCA_5F000350225.2_202013-05-22] 926 sequences; 104,980,420 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq759 123 5e-23 seq454 120 7e-22 >seq759 Length=98512 Score = 123 bits (136), Expect = 5e-23 Identities = 653/1027 (64%), Gaps = 53/1027 (5%) Strand=Plus/Plus Query 248461 TTCGACAAAATCTCGGCGCGCATCAAGAAGCTCTGTTATGGTCTGGAACCCAACTTCGTC 248520 |||||||| ||| |||| |||||||||||||| || || ||||| || | ||||| Sbjct 47161 TTCGACAAGATCACGGCCCGCATCAAGAAGCTGGCATACGGCCTGGACCCTA---TCGTC 47217 Query 248521 GATCATGTGGCCA---TCGCCCAGAAAGTTATTTCGGGCGTCTACACCGGAGTAACAACG 248577 ||| || || ||||| ||| || ||||||| ||| ||| || || ||| Sbjct 47218 GAT---GTCACCGAGGTCGCCATGAAGGTCTGCACGGGCGTGTACGACGGTGTCACCACG 47274 Query 248578 ACAGAACTGGACACCTTAGCTGCGGAGACGGCGGCGTACATGGCGATTGCACACCCCGAC 248637 | || |||| | | || |||||||| || ||||||||| | | | ||||| |||| Sbjct 47275 TCCGAGTTGGATGACCTCGCCGCGGAGACCGCAGCGTACATGTCCACTAAACACCACGAC 47334 Query 248638 TACTCGCTGCTGGCCGGGAGGATCGCCGTCTCAAGGCTTCACAAAGAAACGAAAGAGTCG 248697 |||||||| ||||| | |||||||| || | || || || | || |||| Sbjct 47335 TACTCGCTCCTGGCATCTCGCATCGCCGTGTCTAACCTCCATAAGAACACCGTCAAGTCC 47394 Query 248698 TTCGTCGAAAC------CATG-GCTG-ACCTACATGC-------CTATG----------- 248731 ||| ||| || || | ||| | |||| || | || Sbjct 47395 TTCTCCGAGACTGCTGACAGGCTCTGCAATTACAGGCTCCCCGTCACTGACGCCCCGGCC 47454 Query 248732 -GGATGGTCGCCGATGACGTCCACACCGTCATTCAGGA--CAACGCGCACCTCCTGGACG 248788 | | ||||| | |||||||| || ||| || | || | || |||| | Sbjct 47455 CCGCTTGTCGCGGCGGACGTCCA-TGAGTTTGTCATGAAGAATCGTGATACT-TTGGATG 47512 Query 248789 GCGCGATTGACTACGGCAAAGATTTGGAGTACGATTTCTTTGCTTTCAAAACGCTGGAGA 248848 || ||| ||||| || ||||| ||| || | ||||| || || || ||||| Sbjct 47513 CTGCCATTATCTACGACAGGGATTTTTCGTATGACTACTTTGGATTTAAGACTTTGGAGC 47572 Query 248849 AATCGTATCTCCTCAAAATTGATGGCAAGATCGTGGAACGAATTCAGCACATGTTGATGC 248908 |||||||| ||| || | || ||||| ||||| | ||||| ||| | |||| Sbjct 47573 GCTCGTATCTGCTCCGCATCAACGGAAAGATTGTGGAGAGGCCCCAGCATATGCTCATGC 47632 Query 248909 GAGTGGCTGTCGGGATTCACAAGGATGACATAGAGAGCGTGCTCGAGACGTACACCGGAA 248968 | ||||| ||||| |||||| | || || || | | || | || || | Sbjct 47633 GTGTGGCAGTCGGCATTCACCTCGGCGATATGGAAGCCATCCTGGGCACATATGATGCCC 47692 Query 248969 TGAGTGA-ACGCTGGATGACACATGCCACACCGACGCTCTTCAACGCCGGTACCGTCAAC 249027 || | | ||| | || |||||| | || ||||| ||||| || || ||| | | Sbjct 47693 TGTCCAACAAGCT-CTTCACCCATGCCTCGCCAACGCTATTCAATGCAGGCACCTGCCGC 47751 Query 249028 AATCAGCTGAGCTCGTGCTTTCTTCTTGCCATGCAAGACGACTCTGTCGACGGCATTTAT 249087 ||||| ||| ||||| ||||| | ||| || ||||| | || ||||||||| Sbjct 47752 CCCCAGCTATCCTCTTGCTTCCTTCTCACTATGACTGAGGACTCCATTGAAGGCATTTAT 47811 Query 249088 GACACGCTTAAACAGACGGCGAAGATTTCTAAATTCGCGGGCGGAATCGGTCTCTCCGTC 249147 ||||| || || | || | ||||| || ||| ||||| || || | || || Sbjct 47812 GACACTCTCAAGCGCTGCGCTATCATTTCCAAGGCCGCAGGCGGCATTGGATTGTCTATC 47871 Query 249148 TCCAACATCCGA-GCGAAGGGTTCGTACATCAAAGGTACAAATGG--GGTCAGTGATGGT 249204 |||||||||| || | | ||||||||| ||||| || || ||| | || Sbjct 47872 CACAACATCCGATGCACAAAG-TCGTACATCCGTGGTACCAACGGTACGTC--GAACGGA 47928 Query 249205 ATCGTACCCCTCCTTCGATGCTTTGAGTCCACCGCCAGGTTCATCAACCA---GGCCGGG 249261 || || || | ||||| ||| | ||| || |||| | |||| | |||| Sbjct 47929 ATTGTGCCTATGCTTCGTGTCTTCAATGACACAGCTAGGTATGTGGACCAAGGTGGCGGG 47988 Query 249262 CGCCGAAAGGGGTCGTTCGCCATGTATTTGGAAGTGTGGCACGCCGATATATTGGAGTTC 249321 || ||||| | || || || |||||||| |||||||| ||||| | || || Sbjct 47989 AAGCGGAAGGGTGCATTTGCTATCTATTTGGAGCCTTGGCACGCAGATATCCTCGACTTT 48048 Query 249322 CTGGACTTGAAAAAGAACAACGGCAACG-AGCTCATGAGAGCGCGTGACCTCTTCTACGG 249380 || || | ||||| | ||||| | || || ||| || ||||||||||||||||| Sbjct 48049 CTTGATCTTCGCAAGAATCATGGCAAGGAAGAACA-GAGGGCTCGTGACCTCTTCTACGG 48107 Query 249381 CCTGTGGGTCTCCGACTTGTTCATGCGCCGCGTCAAGGCCGACGGCGATTGGACGCTTCT 249440 ||| ||| || | ||| | || ||| |||||| | || || ||| | ||| ||||| | Sbjct 48108 CCTATGGATCCCAGACCTCTTTATGAAGCGCGTCGAAGCTGATGGCCAGTGGTCGCTTTT 48167 Query 249441 TTCTCCG 249447 | |||| Sbjct 48168 CTGTCCG 48174 >seq454 Length=272142 Score = 120 bits (132), Expect = 7e-22 Identities = 271/413 (66%), Gaps = 27/413 (7%) Strand=Plus/Minus Query 253994 TGGCGACCTTCCTCATTTGCTTTTCCACGGTCCTCCCGGAACAGGCAAGACGTCAACCAT 254053 |||||| || || ||| | || || |||| || || || || || |||||||| ||| Sbjct 208170 TGGCGAGCTGCCGCATCTTCTGTTTTACGGGCCGCCGGGCACGGGAAAGACGTCGACCGC 208111 Query 254054 CCTGGCGCTGGCCCGAACCCTGTTGGGCGAGGGGAACATGAGAGAGCGCGTGCTCGAGCT 254113 |||||||| | || | |||| || | | |||| | | | | | ||||| ||||| Sbjct 208110 ACTGGCGCTAGTGCGCGACTTGTTCGGTGTGCAGAACCTCCGCGCGAGGGTGCTGGAGCT 208051 Query 254114 GAACGCTTCTGACGAACGCGGGTTGGACGTCGTCCGCGACAAGATCAAGACTTTCTCCAA 254173 |||||||| ||||| || ||| | | || || ||||||||||||||||| || | | Sbjct 208050 CAACGCTTCGGACGAGCGTGGGATCAAGGTGGTGCGCGACAAGATCAAGACGTTTGCGCA 207991 Query 254174 GATGTCGATTTCGT----CGTTCCAACCCGGC-----------------------TGTCC 254206 || | | | || ||| || || || || || Sbjct 207990 GACGACCGTCTCTAACCCCGTCCCGGCCAAGCACGGAGATACGCGCAAGTATCCGTGCCC 207931 Query 254207 GCCTTTCAAGCTCGTGATCCTGGACGAGGCGGACACCATGACGGCCGACGCGCAGTCCGC 254266 | | |||||| | |||||| |||||||||| ||| | || ||| ||| |||||| | || Sbjct 207930 GGCGTTCAAGGTGGTGATCTTGGACGAGGCCGACGCTATCACGATCGATGCGCAGACGGC 207871 Query 254267 CCTCCGCCGAACGATGGAGACGCACTCCGTTGTGACGCGTTTTTGCCTGGTGTGCAACTA 254326 || ||| | || |||||| |||| ||| ||||| | || ||| | ||||| || Sbjct 207870 GCTGCGCAGGACTATGGAGGCGCATTCCAAAGTGACCAGGTTCATTCTGATCTGCAATTA 207811 Query 254327 CGTGTCGAAGATCATCGCCCCGCTGGCTTCTCGGTGCGCCAAGTTTCGATTCA 254379 | | ||| |||| ||||||| | || | |||||||||||||| |||| Sbjct 207810 TATCAGCAGGATTATCGGCCCGCTGACGTCGAGATGCGCCAAGTTTCGGTTCA 207758 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073753660432768