Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chondrus_20crispus_20[genbank_20GCA_5F000350225.2_202013-05-22] 926 sequences; 104,980,420 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq135 123 2e-23 seq210 116 3e-21 >seq135 Length=363025 Score = 123 bits (136), Expect = 2e-23 Identities = 142/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 45146 TCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAAT 45205 |||||||| |||||||||||||||| || | || || || || || |||||||| Sbjct 297753 TCCTTCTGGATGTTGTAGTCGTTCAACGTACGCCCATCCTCGAGCTGCTTGCCGGCGAAG 297812 Query 45206 ATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCC 45265 || | || ||| || || || || | ||||||||||||| ||| || |||||| | Sbjct 297813 ATAAGCCTCTGCTGATCAGGCGGGATACCCTCCTTGTCCTGAATCTTAGTCTTAACGTTC 297872 Query 45266 GCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACA 45325 | | | ||||| | ||| ||||||| ||| || ||||||||||| || ||||| ||| Sbjct 297873 TCGATGGTGTCCGAAGACTCGACCTCCAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACA 297932 Query 45326 AAGATTTGCAT 45336 ||||| ||||| Sbjct 297933 AAGATCTGCAT 297943 Score = 123 bits (136), Expect = 2e-23 Identities = 142/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 45146 TCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAAT 45205 |||||||| |||||||||||||||| || | || || || || || |||||||| Sbjct 298209 TCCTTCTGGATGTTGTAGTCGTTCAACGTACGCCCATCCTCGAGCTGCTTGCCGGCGAAG 298268 Query 45206 ATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCC 45265 || | || ||| ||||| || || | ||||||||||||| ||| || |||||| | Sbjct 298269 ATAAGCCTCTGCTGGTCAGGCGGGATACCCTCCTTGTCCTGAATCTTAGTCTTAACGTTC 298328 Query 45266 GCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACA 45325 | | | ||||| | ||| ||||| | ||| || ||||||||||| || ||||| ||| Sbjct 298329 TCGATGGTGTCCGAAGACTCGACCTCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACA 298388 Query 45326 AAGATTTGCAT 45336 ||||| ||||| Sbjct 298389 AAGATCTGCAT 298399 Score = 122 bits (134), Expect = 7e-23 Identities = 153/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||| || ||| ||||||||||||||||| ||| || ||| |||| || Sbjct 298875 ACCAAGTGGAGAGTGGATTCCTTCTGAATGTTGTAATCGGAAAGGGTGCGGCCGTCCTCG 298934 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || ||||| ||||| ||||| ||||| ||||| || || | || ||||||||| | Sbjct 298935 AGCTGCTTTCCAGCGAAGATCAAACGCTGCTGGTCAGGCGGGATTCCTTCCTTGTCCTGA 298994 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | | ||||| | ||| ||||||| ||| || |||||| Sbjct 298995 ATCTTAGTCTTCACGTTCTCAATGGTGTCCGAAGACTCGACCTCCAGGGTGATGGTCTTG 299054 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 || || || ||||| || || || |||||| Sbjct 299055 CCGGTGAGGGTCTTGACGAAAATCTGCATG 299084 Score = 114 bits (126), Expect = 1e-20 Identities = 140/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 45146 TCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAAT 45205 |||||||| |||||||||||||||| || | || || || || || || ||||| Sbjct 297981 TCCTTCTGGATGTTGTAGTCGTTCAACGTACGCCCATCCTCGAGCTGCTTACCAGCGAAG 298040 Query 45206 ATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCC 45265 || | || ||| || || || || | ||||||||||||| ||| || ||| || | Sbjct 298041 ATAAGCCTCTGCTGATCAGGTGGGATACCCTCCTTGTCCTGAATCTTAGTCTTCACGTTC 298100 Query 45266 GCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACA 45325 | | | ||||| | ||| ||||||| ||| || ||||||||||| || ||||| ||| Sbjct 298101 TCGATGGTGTCCGAAGACTCGACCTCCAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACA 298160 Query 45326 AAGATTTGCAT 45336 ||||| ||||| Sbjct 298161 AAGATCTGCAT 298171 Score = 105 bits (116), Expect = 5e-18 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 45146 TCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAAT 45205 |||||||| |||||||||||||||| || | || || || || || |||||||| Sbjct 298437 TCCTTCTGGATGTTGTAGTCGTTCAACGTACGTCCATCCTCGAGCTGCTTGCCGGCGAAG 298496 Query 45206 ATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCC 45265 || | || ||| ||||| || || | ||||||||| ||| ||| || ||| || | Sbjct 298497 ATAAGCCTCTGCTGGTCAGGTGGGATACCCTCCTTATCCTGAATCTTAGTCTTCACGTTC 298556 Query 45266 GCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACA 45325 | | ||||| | ||| ||||| | |||||| |||||||| || || ||||| ||| Sbjct 298557 TCAATAGTGTCCGAAGACTCGACCTCAAGGGTAATTGTCTTGCCTGTTAGCGTCTTGACA 298616 Query 45326 AAGATTTGCAT 45336 || || ||||| Sbjct 298617 AAAATCTGCAT 298627 Score = 98.7 bits (108), Expect = 8e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 ||||| || || || |||||| || ||||||||||| || |||| |||| || Sbjct 298647 ACCAAATGAAGAGTAGACTCCTTTTGGATGTTGTAGTCAGAGAGAGTGCGACCGTCCTCG 298706 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || || ||||| || | || ||| ||||| || || | |||||||||||| | Sbjct 298707 AGCTGCTTGCCAGCGAAGATAAGCCTCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGA 298766 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | ||||| |||| ||||||| ||| || ||||| Sbjct 298767 ATCTTCGTCTTCACATTCTCAATAGTGTCCGAGGCCTCAACCTCCAGGGTGATAGTCTTT 298826 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || |||| ||||| ||||| || ||||| Sbjct 298827 CCAGTCAAGGTCTTGACAAAAATCTGCAT 298855 Score = 87.8 bits (96), Expect = 1e-12 Identities = 137/196 (70%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204 ||||||||| |||||||||||| || ||| |||| || || || || |||||||| Sbjct 299120 CTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGTCCGTCTTCAAGCTGCTTACCGGCGAA 299179 Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGC 45264 || | || ||| ||||| || || | || ||||||||| ||| || ||| || Sbjct 299180 GATGAGCCTCTGCTGGTCAGGGGGGATGCCTTCCTTGTCCTGAATCTTCGTCTTCACATT 299239 Query 45265 CGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCAC 45324 | | | | ||||| ||| ||||| | || || ||||| || || || ||||| || Sbjct 299240 CTCGATGGTGTCCGAGGACTCGACCTCGAGAGTGATGGTCTTCCCGGTGAGGGTCTTGAC 299299 Query 45325 AAAGATTTGCATGTTG 45340 || || |||||| || Sbjct 299300 GAAAATCTGCATGATG 299315 >seq210 Length=341256 Score = 116 bits (128), Expect = 3e-21 Identities = 142/194 (73%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 45146 TCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAAT 45205 |||||||| ||||||||||| ||| |||||| || || || || || || ||||| Sbjct 96398 TCCTTCTGGATGTTGTAGTCTGACAGAGTGCGATCATCCTCGAGCTGCTTGCCAGCGAAG 96457 Query 45206 ATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCC 45265 || | ||||| ||||||||||| | ||||| |||||| || || ||| || | Sbjct 96458 ATGAGACGCTGCTGGTCGGGAGGAATGCCCTCTTTGTCCTGGATCTTAGTCTTCACATTC 96517 Query 45266 GCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACA 45325 || | | | || |||| ||||| | ||||||||||| ||||| || ||||||||| Sbjct 96518 GCGATGTTATCAGAGGCCTCGACCTCAAGAGTAATCGTCTTACCCGTGAGGGTCTTCACA 96577 Query 45326 AAGATTTGCATGTT 45339 ||||| ||||| || Sbjct 96578 AAGATCTGCATTTT 96591 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395070741329446