Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chondrus_20crispus_20[genbank_20GCA_5F000350225.2_202013-05-22] 926 sequences; 104,980,420 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq759 179 3e-40 seq387 138 1e-27 seq135 109 5e-19 seq210 91.5 1e-13 >seq759 Length=98512 Score = 179 bits (198), Expect = 3e-40 Identities = 633/981 (65%), Gaps = 12/981 (1%) Strand=Plus/Minus Query 23006 ACAAACTTGTTGACGGCGATCGAGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTG 23065 ||||||||||||| ||| || || || | ||||| || || ||||| || || || Sbjct 48479 ACAAACTTGTTGAGGGCAATAGAAGCCAAGTTGCAAACAGCAACCTCATCCGGGGCAGTA 48420 Query 23066 TACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTGCCCAAATTGCTCTGGTTG 23125 ||||| ||||| || || || |||||| | | || || || || | || ||||||| Sbjct 48419 TACTCAACAATCTCTGTGCAAAGATTGGAAGATTTGATGGTTCCGAGGTTTTGCTGGTTG 48360 Query 23126 CTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGAC 23185 || || || || || | ||||||||||||||||||||| | || || || | ||| | Sbjct 48359 CTCTTCCGGTTACAAGCATCCTTGTAGAGCATGTACGGATTTCCAGTTTCAATCTGGGCT 48300 Query 23186 TCGATGATCGCTCGCCACATAGT-CTGAGCGTGAACACGTCGCA-CGTAC-CTGCCTTCT 23242 |||| || || ||| || | || || | || | | ||| | | ||| || Sbjct 48299 TCGAGAATAGCATACCAGATCTTTCT---CGCGCTCATGGAACTGCGTGCTCGGCCGTCC 48243 Query 23243 TCCTCGTACTTTTGGTACAACGCGTCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGC 23302 | ||||||||||| ||||| | | |||||||| | || || ||||||||| || || Sbjct 48242 TTCTCGTACTTTTCGTACAGCTCTTCAAATTCAGTGCCATAGACGTCGGCCAGACCAGGG 48183 Query 23303 GATTGCATCGGACACATGAGACTCCACATTGAGTCATTTTCAACGCGTCTCATAAAAAGA 23362 || | ||||||| | || |||| ||| ||| ||||| ||||||| || Sbjct 48182 GACTCATTCGGACAGAAAAGCGACCACTGGCCATCAGCTTCGACGCGCTTCATAAAGAGG 48123 Query 23363 TCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTC 23422 || || |||||||| ||||||| || || || || | | || || ||||| ||| Sbjct 48122 TCTGGGATCCATAGGCCGTAGAAGAGGTCACGAGCCCTCTGTTCTTCCTTGCCATGATTC 48063 Query 23423 TTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAAC 23482 || | ||| | |||||| | | || || ||||| ||||| | || | ||||| Sbjct 48062 TTGCGAAGATCAAGAAAGTCGAGGATATCTGCGTGCCAAGGCTCCAAATAGATAGCAAAT 48003 Query 23483 GCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTT 23542 || ||| | ||| ||| || || || || || | || |||| ||| | || | Sbjct 48002 GCACCCTTCCGCTTCCCGCCACCTTGGTCCACATACCTAGCTGTGTCATTGAAGACACGA 47943 Query 23543 AGCATCGGCACGAGACCGTTGGACGCGCCG--CCTACGCCCGCCACACTCGAACCTTTTG 23600 ||||| ||||| | ||||| |||| ||| ||| | | || || || || Sbjct 47942 AGCATAGGCACAATTCCGTTCGACGTACCGTTGGTACCACGGATGTAC---GACTTTGTG 47886 Query 23601 C-TCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCCGATTTCGATATCATCGCGCAT 23659 | ||| | |||||| | || || ||||| || | | || || || || ||||| Sbjct 47885 CATCGGATGTTGTGGATAGACAATCCAATGCCGCCTGCGGCCTTGGAAATGATAGCGCAG 47826 Query 23660 TGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACAC 23719 | || |||||||| || ||||| || ||| |||||| | | | || | ||| || Sbjct 47825 CGCTTGAGAGTGTCATAAATGCCTTCAATGGAGTCCTCAGTCATAGTGAGAAGGAAGCAA 47766 Query 23720 GAAGACATTTGCGCTTTGGGCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAG 23779 || || | || | | || | || ||| || || || ||| || || ||| Sbjct 47765 GAGGATAGCTGGGGGCGGCAGGTGCCTGCATTGAATAGCGTTGGCGAGGCATGGGTGAAG 47706 Query 23780 TATCCATTCGACATTAGATTGTACGTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATA 23839 || |||| || || ||| | | | ||| || || || | ||| || Sbjct 47705 AGCTTGTTGGACAGGGCATCATATGTGCCCAGGATGGCTTCCATATCGCCGAGGTGAATG 47646 Query 23840 CCGATGGCGACGCGCATCATCATGTATTGAGGTCTCTCGACCGTGACGCCGTTAATTTTG 23899 |||| || || ||||| | ||| | || || ||||| || | ||||| || | Sbjct 47645 CCGACTGCCACACGCATGAGCATATGCTGGGGCCTCTCCACAATCTTTCCGTTGATGCGG 47586 Query 23900 AACAGATATGAACGTTGCATCGTTTTAAATCCAAAATAGTCATAGTTAAAGTCACGATCG 23959 | |||||| || || | || || ||||||||||| |||||||| ||| || | ||| Sbjct 47585 AGCAGATACGAGCGCTCCAAAGTCTTAAATCCAAAGTAGTCATACGAAAAATCCCTGTCG 47526 Query 23960 TGCACTATGGCCGAATTCAAA 23980 | | ||||| | || |||| Sbjct 47525 TAGATAATGGCAGCATCCAAA 47505 >seq387 Length=288413 Score = 138 bits (152), Expect = 1e-27 Identities = 345/514 (67%), Gaps = 19/514 (4%) Strand=Plus/Minus Query 57597 GCATCGTTTTGGACCGTCGAAGAAGTAGACCTGTCTAAGGATCTGAGCGATTGGGATTCC 57656 |||||||||||||||| || ||||| || || |||||||| ||||||| || | Sbjct 56757 GCATCGTTTTGGACCGCAGAGGAAGTTGATCTCCAGCAGGATCTGCACGATTGGAATGGC 56698 Query 57657 CTCAAAGAATCTGAGAGAAATTTTATTAAACACGTGT--TGGCGTTTTTCGCCGCATCCG 57714 ||||| || | || | | || | | | ||||| | || |||||||||||||| | Sbjct 56697 CTCAAGGACGCCGAACGCCACTTCCTGA--CTCGTGTCCTCGCCTTTTTCGCCGCATCTG 56640 Query 57715 ATGGTATTGTTAACGAGAATTTGGTCGAAAGATTTT-CACAAGAAGTGCAAGTGACGGAG 57773 | || |||||| || || | |||| | |||| |||| || || || | | || Sbjct 56639 ACGGAATTGTTTTGGAAAACCTTATCGAGCGCTTTTGCACA-GACGTCCAGCTTCCAGAA 56581 Query 57774 GCGAGATGCTTTTACGGATTTCAAGTGGCCATTGAAAACGTGCATTCAGAAATGTATTCG 57833 ||| | || ||||| | ||||| | ||||| || |||||||| || ||||||||||| Sbjct 56580 GCGCGCTGTTTTTATGCCTTTCAGGCCGCCATGGAGAACGTGCACTCGGAAATGTATTCA 56521 Query 57834 CTACTCATCGATACGTACGTGAAGGACAACGACGAGAAACGTAGACTGTTCAACGCGATC 57893 ||||| || ||||| || | ||| | ||||| | ||| || ||| | Sbjct 56520 CTACTGATTGATACATATATAGCCGACCCTGCGGAGAA---GACACTTTTGTTTGCGGCC 56464 Query 57894 G----AAACAATGCCCGCGATCGCCAAGAAGGCAGAGTGGTCAATCAAATGGATAAAAAG 57949 | | || | | ||| || || ||||| |||||| | ||| ||||| || Sbjct 56463 GTGGAGAGCATTCCGTGCGTGCG-GAAAAAGGCGGAGTGGGCTCTCAGGTGGAT---TAG 56408 Query 57950 CGCCACGGCCACGTTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTT 58009 | || || ||| | || ||||| | ||||| || ||||| || || || ||||| Sbjct 56407 CTCCGACGCAGGGTTTGTGGAAAGGCTCGTGGCGTTTGCAGCCGTGGAGGGGATTTTCTT 56348 Query 58010 TTC-GGGCAGCTTTGCGGCAATATTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGA 58068 ||| ||| | ||||| || | |||||||||||||| | || || ||||| || || | Sbjct 56347 TTCGGGGTCGTTTTGC-GCCGTGTTTTGGATGAAGAAGAGGGGGCTCATGCCTGGGCTCA 56289 Query 58069 CGTTTAGCAACGAGTTGATATCGCGCGACGAGGG 58102 | || ||||||| | ||||| || || || || Sbjct 56288 CCTTCTCCAACGAGCTTATATCACGGGATGAAGG 56255 >seq135 Length=363025 Score = 109 bits (120), Expect = 5e-19 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| ||||| || ||||| |||| || || || |||||| | || ||||| | || Sbjct 298855 ATGCAGATTTTTGTCAAGACCTTGACTGGAAAGACTATCACCCTGGAGGTTGAGGCCTCG 298796 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | | || | || || || || ||||||||| ||| | ||||| |||||| Sbjct 298795 GACACTATTGAGAATGTGAAGACGAAGATTCAGGACAAGGAGGGCATCCCGCCTGACCAG 298736 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | || || ||||||||||| ||| | || ||| | ||| | || || ||| Sbjct 298735 CAGAGGCTTATCTTCGCTGGCAAGCAGCTCGAGGACGGTCGCACTCTCTCTGACTACAAC 298676 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTT 31405 || ||||| || || ||||||||| |||| ||| Sbjct 298675 ATCCAAAAGGAGTCTACTCTTCATTTGGTTCTT 298643 Score = 104 bits (114), Expect = 2e-17 Identities = 153/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| |||||||| ||||| || || ||||| || |||||| | || || || | || Sbjct 299084 CATGCAGATTTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTGGAGGTCGAGTCTTC 299025 Query 31252 CGACAGTGTCGAAACGGTCAA-ACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACC 31310 |||| | || | || || || ||| | |||||||||||| | ||||| |||| Sbjct 299024 GGACACCATTGAGAACGTGAAGACTAAGATTCA-GGACAAGGAAGGAATCCCGCCTGACC 298966 Query 31311 AGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATA 31370 |||||||| | || |||||||| || ||| | || ||| || | |||||| | Sbjct 298965 AGCAGCGTTTGATCTTCGCTGGAAAGCAGCTCGAGGACGGCCGCACCCTTTCCGATTACA 298906 Query 31371 ACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||||||| || ||||| ||||| || |||| || Sbjct 298905 ACATTCAGAAGGAATCCACTCTCCACTTGGTGCT 298872 Score = 93.3 bits (102), Expect = 4e-14 Identities = 149/214 (70%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| |||||||| ||||| || || || || || ||||| |||| || || | || Sbjct 299312 CATGCAGATTTTCGTCAAGACCCTCACCGGGAAGACCATCACTCTCGAGGTCGAGTCCTC 299253 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| |||| | || || || || ||||||||||||| | || || ||||| Sbjct 299252 GGACACCATCGAGAATGTGAAGACGAAGATTCAGGACAAGGAAGGCATCCCCCCTGACCA 299193 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||| | || || ||||| || || ||| | |||||| || | ||| || || Sbjct 299192 GCAGAGGCTCATCTTCGCCGGTAAGCAGCTTGAAGACGGACGCACCCTCTCCGACTACAA 299133 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTT 31405 ||| || || || || ||||| ||||| || ||| Sbjct 299132 CATCCAGAAGGAGTCTACTCTCCATCTCGTCCTT 299099 >seq210 Length=341256 Score = 91.5 bits (100), Expect = 1e-13 Identities = 150/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 31189 AAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACC 31248 ||| ||||| || || || ||||| || || || || ||||| || | || || || | Sbjct 96592 AAAAATGCAGATCTTTGTGAAGACCCTCACGGGTAAGACGATTACTCTTGAGGTCGAGGC 96533 Query 31249 GTCCGACAGTGTCGAAACGGTCAA-ACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCG 31307 || || | ||| | || || || ||| | |||||| || ||| | || |||| Sbjct 96532 CTCTGATAACATCGCGAATGTGAAGACTAAGA-TCCAGGACAAAGAGGGCATTCCTCCCG 96474 Query 31308 ACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATT 31367 ||||||||||||| || ||||||||||| ||| | || || | ||| || || | Sbjct 96473 ACCAGCAGCGTCTCATCTTCGCTGGCAAGCAGCTCGAGGATGATCGCACTCTGTCAGACT 96414 Query 31368 ATAACATTCAAAAAGAATCGACTCTTCATCTGGT 31401 | ||||| || || |||||||||||||| || || Sbjct 96413 ACAACATCCAGAAGGAATCGACTCTTCACCTTGT 96380 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445761240253920