Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chondrus_20crispus_20[genbank_20GCA_5F000350225.2_202013-05-22] 926 sequences; 104,980,420 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq759 181 1e-40 seq898 84.2 3e-11 >seq759 Length=98512 Score = 181 bits (200), Expect = 1e-40 Identities = 635/980 (65%), Gaps = 30/980 (3%) Strand=Plus/Minus Query 62925 ATTACAAACATGTTCAATGCAACAGATGCCAGATTACACACGGCTACCTCATTAGCATCC 62984 ||||||||| |||| | |||| ||| |||| || || || || ||||||| | | Sbjct 48482 ATTACAAACTTGTTGAGGGCAATAGAAGCCAAGTTGCAAACAGCAACCTCATCCGGGGCA 48423 Query 62985 GCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGA 63044 | ||| | | ||||| ||||||||||| | | ||||| ||||| | ||||| || Sbjct 48422 GTATACTCAACAATCTCTGTGCAAAGATTGGAAGATTTGATGGTTCCGAGGTTTTGCTGG 48363 Query 63045 TTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGA 63104 || ||||| |||||| |||||||| || || ||| | ||| | |||||||||||||| Sbjct 48362 TTGCTCTTCCGGTTACAAGCATCCTTGTAGAGCATGTACGGATTTCCAGTTTCAATCTGG 48303 Query 63105 GATTCTATAATCGCTTTCCAGA--CGACTCGAGCCTTTATTATAGATTTGTAT-CTC--- 63158 | ||| | ||| || | ||||| |||| || | || || || | ||| Sbjct 48302 GCTTCGAGAATAGCATACCAGATCTTTCTCGCGC-----TCATGGAACTGCGTGCTCGGC 48248 Query 63159 ---CTTTCTCTTTCGTATAGAGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCC 63215 | ||||| | | | | | |||| ||| || || || | || | | || Sbjct 48247 CGTCCTTCTCGTACTTTTCG----TACAGCTCTTCAAATTCAGTGCCATAGACGTCGGCC 48192 Query 63216 AATCTAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTC 63275 | | ||| | |||| |||||| | | |||||||| || ||| | | || || ||| Sbjct 48191 AGACCAGGGGACTCATTCGGACAGAAAAGCGACCACTGGCCATCAGCTTCGACGCGCTTC 48132 Query 63276 ATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTTGTTCTATGTTCCTCGTT 63334 |||||||| || || ||||| || || || || || || | | || ||||| || || Sbjct 48131 ATAAAGAGGTCTGGGATCCATAG-GCCGTAGAAGAGGTCACGAGCCCTCTGTTCTTCCTT 48073 Query 63335 TCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTA 63394 || |||||| |||||| || || | | ||||| | ||||| || ||||| || Sbjct 48072 GCCATGATTCTTGCGAAGATCAAGAAAGTCGAGGATATCTGCGTGCCAAGGCTCCAAATA 48013 Query 63395 TATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATT 63454 || || | | || ||| || || || || || | || ||||| |||| ||| Sbjct 48012 GATAGCAAATGCACCCTTCCGCTTCCCGCCACCTTGGTCCACATACCTAGCTGTGTCATT 47953 Query 63455 ATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCC 63514 | || | | ||| || | ||| ||||| || |||| |||||||| ||| || | Sbjct 47952 GAAGACACGAAGCATAGGCACAATTCCGTTCGACGTACCGTTGGTACCACGGATGTA--C 47895 Query 63515 TCCACTG-GCA-CGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATT 63572 | || ||| || || || || || | || || || ||||| || || || Sbjct 47894 GACTTTGTGCATCGGATGTTGTGGATAGACAATCCAATGCCGCCTGCGGCCTTGGAAATG 47835 Query 63573 AATGCGCATCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGT 63632 | ||||| || || | |||||||| |||||||| ||| || || |||| | || Sbjct 47834 ATAGCGCAGCGCTTGAGAGTGTCATAAATGCCTTCAATGGAGTCCTCAGTCATAGTGAGA 47775 Query 63633 AGAAAACAGCTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCG 63692 || || || || | ||| | || || || ||||| |||| || || || || Sbjct 47774 AGGAAGCAAGAGGATAGCTGGGGGCGGCAGGTGCCTGCATTGAATAGCGTTGGCGAGGCA 47715 Query 63693 TGCGTAAACCATTTTTCAGAAAGTAGATTGTACGT-CTCA--ATAGCTGAGTCTATATCC 63749 || || || || | || || || || || | || || ||| || ||||| Sbjct 47714 TGGGTGAAGAGCTTGTTGGACAGGGCATCATATGTGCCCAGGATGGCT---TCCATATCG 47658 Query 63750 CATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTG 63809 | | ||||| || ||||| |||||||| | ||| ||||| || || || ||||| || Sbjct 47657 CCGAGGTGAATGCCGACTGCCACACGCATGAGCATATGCTGGGGCCTCTCCACAATCTTT 47598 Query 63810 TTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAA 63869 ||| || | || || || |||||||| ||||| ||||| |||| || ||| Sbjct 47597 CCGTTGATGCGGAGCAGATACGAGCGCTCCAAAGTCTTAAATCCAAAGTAGTCATACGAA 47538 Query 63870 AAGTCTCGTTCGTAAATAAT 63889 || || | ||||| ||||| Sbjct 47537 AAATCCCTGTCGTAGATAAT 47518 >seq898 Length=425369 Score = 84.2 bits (92), Expect = 3e-11 Identities = 147/209 (70%), Gaps = 4/209 (2%) Strand=Plus/Plus Query 33578 CAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGT 33637 || ||| ||| ||||| |||| || ||||| | | || | ||||||||| || || Sbjct 413338 CAGACAGGCGTGGTCGCAATGCAACCCTTCGTCACGAGAGATGAGTTCGTTAGAGAAGGT 413397 Query 33638 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAA 33697 ||| || ||||| | ||||||||| || || | || |||| || || || || || Sbjct 413398 GAGGCCCGGCATCAAGCCACGCTTCTTGAGGTAGAAAATGGCGCAAAAAGAGCCCGAGAA 413457 Query 33698 GAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCATG 33757 ||| || || || || || |||||||| | |||| |||| | ||| || |||| | | Sbjct 413458 GAAAATGCCCTCCACGGCGGCAAAGGCCACGAGTCGCTCTGCG-AACGAGCCCTGTGAGG 413516 Query 33758 TA-TCCA-CTTTTGAGCCCAATCGGCCTT 33784 | |||| | || |||||||||||||| Sbjct 413517 AAATCCAGCGAATG-GCCCAATCGGCCTT 413544 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629810309861280