Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chondrus_20crispus_20[genbank_20GCA_5F000350225.2_202013-05-22] 926 sequences; 104,980,420 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq759 176 6e-39 seq898 87.8 2e-12 >seq759 Length=98512 Score = 176 bits (194), Expect = 6e-39 Identities = 806/1263 (64%), Gaps = 44/1263 (3%) Strand=Plus/Minus Query 65451 AGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGA 65510 ||||||||||| | ||||| || | | | || | ||||||||| || | |||||| | Sbjct 48767 AGTTCACAACTGGTCTCTACAGCGCTGAAGTAGAGGGTTTCGAAAATATCCTTATTCAAC 48708 Query 65511 TCTTGTGCTTCCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCT 65570 || | ||| || || ||||| || | ||||||||| | |||||| | || Sbjct 48707 TCACGAGCTCCCTCACTCTCAAACGGCATGCGCATGAGAATAAATGTGTCTGCAAGCCCC 48648 Query 65571 TGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGA 65630 |||| || ||||| || || | || | | | || || | | |||||| | |||||| Sbjct 48647 TGAATTCCGATACCAATTGGGCGGTGGCGCATGTTGGAATTCTTAGCTTCCTGGATAGGA 48588 Query 65631 TAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTA-CTTTGAC-CACATC-- 65686 || | || | || || | ||| || ||||| | ||| | ||| | | ||| | Sbjct 48587 TAGAAGTTGACGTCGATTACTTTGTTAAGATTGCGCGCAACCATCTTCGTCACACGGCGA 48528 Query 65687 ----CTTCAG-----TTTGA--GAA---AATCAAATCGCTCATCTATTACAAACATGTTC 65732 |||| | ||| || || || | | | | ||||||||| |||| Sbjct 48527 AGGGCTTCGTGATCATATGACGGAGTGGAACCATCTTCCGGAACAATTACAAACTTGTTG 48468 Query 65733 AATGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATC 65792 | |||| ||| |||| || ||||| || ||||||| | | | ||| | | ||| Sbjct 48467 AGGGCAATAGAAGCCAAGTTGCAAACAGCAACCTCATCCGGGGCAGTATACTCAACAATC 48408 Query 65793 TCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTA 65852 || ||||||||||| | | ||||||||||| | ||||| || || ||||| |||| Sbjct 48407 TCTGTGCAAAGATTGGAAGATTTGATGGTTCCGAGGTTTTGCTGGTTGCTCTTCCGGTTA 48348 Query 65853 CACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCT 65912 || |||||||| || || ||| | ||| | |||||||||||||| | ||| | ||| || Sbjct 48347 CAAGCATCCTTGTAGAGCATGTACGGATTTCCAGTTTCAATCTGGGCTTCGAGAATAGCA 48288 Query 65913 TTCCAGA--CGACTCGAGCCTTTATTATAGATTTGTAT-CTC--TTTTCTCTTTCGTATA 65967 | ||||| |||| || | || || || | ||| || | ||||| Sbjct 48287 TACCAGATCTTTCTCGCGC-----TCATGGAACTGCGTGCTCGGCCGTCCTTCTCGTACT 48233 Query 65968 GTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCG 66027 | |||| ||| || || || | || | | ||| ||||| | |||| || Sbjct 48232 TTTCGTACAGCTCTTCAAATTCAGTGCCATAGACGTCGGCCAGACCAGGGGACTCATTCG 48173 Query 66028 GACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCC 66087 |||| | | |||||||| || ||| | | || || ||||||||||| || || |||| Sbjct 48172 GACAGAAAAGCGACCACTGGCCATCAGCTTCGACGCGCTTCATAAAGAGGTCTGGGATCC 48113 Query 66088 AAAGAGCTATA-AATAAATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGA 66146 | || || || || | || | | || ||||| || || || |||||| |||| Sbjct 48112 ATAG-GCCGTAGAAGAGGTCACGAGCCCTCTGTTCTTCCTTGCCATGATTCTTGCGAAGA 48054 Query 66147 TCGAGGAACGCCATAATATCATAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGC 66206 || || || | | ||||| ||||| || ||||| || || || | | || | Sbjct 48053 TCAAGAAAGTCGAGGATATCTGCGTGCCAAGGCTCCAAATAGATAGCAAATGCACCCTTC 47994 Query 66207 CGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGA 66266 || || || || || || | || ||||| |||| ||| | || | | ||| || Sbjct 47993 CGCTTCCCGCCACCTTGGTCCACATACCTAGCTGTGTCATTGAAGACACGAAGCATAGGC 47934 Query 66267 ATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACT---TGCA-CGAAT 66322 | ||| || || || ||||| ||||| || ||| || | ||| |||| || || Sbjct 47933 ACAATTCCGTTCGACGTACCGTTGGTACCACGGATGTA----CGACTTTGTGCATCGGAT 47878 Query 66323 ATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAA 66382 || || || | || || || ||||| || || || | ||||| || || | Sbjct 47877 GTTGTGGATAGACAATCCAATGCCGCCTGCGGCCTTGGAAATGATAGCGCAGCGCTTGAG 47818 Query 66383 CGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACAT 66442 || ||||| ||||| || || || || |||| | || || || || || | Sbjct 47817 AGTGTCATAAATGCCTTCAATGGAGTCCTCAGTCATAGTGAGAAGGAAGCAAGAGGATAG 47758 Query 66443 TTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTC 66502 ||| | || | || || ||||| |||| || || || || || || || || | Sbjct 47757 CTGGGGGCGGCAGGTGCCTGCATTGAATAGCGTTGGCGAGGCATGGGTGAAGAGCTTGTT 47698 Query 66503 AGAAAGTAGATTGTACGT-CTCA--ATAGCTGAGTCTATATCCCATTGATGAATTCCTAC 66559 || || || || || | || || ||| || ||||| | | ||||| || || Sbjct 47697 GGACAGGGCATCATATGTGCCCAGGATGGCT---TCCATATCGCCGAGGTGAATGCCGAC 47641 Query 66560 TGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAA 66619 ||| |||||||| | ||| ||||| || || || || ||||| ||| || | || Sbjct 47640 TGCCACACGCATGAGCATATGCTGGGGCCTCTCCACAATCTTTCCGTTGATGCGGAGCAG 47581 Query 66620 GTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAAT 66679 || || |||||||| ||||| ||||| |||| || ||||| || | ||||| || Sbjct 47580 ATACGAGCGCTCCAAAGTCTTAAATCCAAAGTAGTCATACGAAAAATCCCTGTCGTAGAT 47521 Query 66680 AAT 66682 ||| Sbjct 47520 AAT 47518 >seq898 Length=425369 Score = 87.8 bits (96), Expect = 2e-12 Identities = 150/210 (71%), Gaps = 6/210 (3%) Strand=Plus/Plus Query 36154 CAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGT 36213 || ||| ||| ||||| || | || ||||| | | || | |||||| || || || Sbjct 413338 CAGACAGGCGTGGTCGCAATGCAACCCTTCGTCACGAGAGATGAGTTCGTTAGAGAAGGT 413397 Query 36214 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAAT-GATCCAGAAA 36272 ||| || ||||| | ||||||||| || || | || |||| |||||| || || || | Sbjct 413398 GAGGCCCGGCATCAAGCCACGCTTCTTGAGGTAGAAAATGG-CGCAAAAAGAGCCCGAGA 413456 Query 36273 AGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTCAT 36332 ||||||| || || || || |||||||| | |||| |||| | ||| || |||| | Sbjct 413457 AGAAAATGCCCTCCACGGCGGCAAAGGCCACGAGTCGCTCTGCG-AACGAGCCCTGTGAG 413515 Query 36333 GTA-TCCA-CTTTTGAGCCCAATCGGCCTT 36360 | | |||| | || |||||||||||||| Sbjct 413516 GAAATCCAGCGAATG-GCCCAATCGGCCTT 413544 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658165181649840