Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chondrus_20crispus_20[genbank_20GCA_5F000350225.2_202013-05-22] 926 sequences; 104,980,420 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq513 192 5e-44 >seq513 Length=248591 Score = 192 bits (212), Expect = 5e-44 Identities = 486/738 (66%), Gaps = 11/738 (1%) Strand=Plus/Minus Query 20776 CTCAAACGGCCATCTCCATCTCTATGTGGGGATGGGGGTCGTAGCCCTCGAGACTCAGAT 20835 ||||||| ||||||| |||| | || | || || ||| ||||| || ||| | Sbjct 25622 CTCAAACCGCCATCTTCATCGCGATCTTCTTGTGCGGACGGTACCCCTCAAGTGTCAAGT 25563 Query 20836 CCGCGCGCGTAAAGTCCTCCAGACGCGCCACCTTTCTCAAAATCTTCAGCCGCGGAAACG 20895 | || || |||||| || | | || || || ||| |||| | ||||||| Sbjct 25562 CTTCGAACGAAAAGTCTTCAATCTCCCCCCGCTCCCT---AATGCTCAGTTGTGGAAACG 25506 Query 20896 GACGCGGGGTCCTCCGCAGCTGAAGCAGCAGGGGATCAACGTGGTTGTTGTAAACGTGGG 20955 | | || ||||| | | ||| | ||| | || || |||||||| || || |||| Sbjct 25505 GCCTGGGCTTCCTCTGTACCTGTTCCCTCAGCGCCTCCACATGGTTGTTATAGACATGGG 25446 Query 20956 CGTCACCCAAGGTGTGCACAAAGTCTCCCGGGGTCAGGCCCGTGACGTGAGCGATCAGAT 21015 | || || | || || |||||||| || || ||| || || || | || |||| Sbjct 25445 CATCCCCTAGCGTATGTACAAAGTCCCCTGGCCTCAAACCAGTCACTTTTGCAATCAAGC 25386 Query 21016 ACGTCAGGAGGGCGTAGCTGGCGATGTTAAACGGGACCCCGAGGCCCATGTCGGCGGACC 21075 ||||||| || |||||||| || ||||| ||||| || ||||||||||| ||| | Sbjct 25385 ACGTCAGCAGCGCGTAGCTCGCAATGTTGAACGGCACGCCGAGGCCCATATCGCAACTAC 25326 Query 21076 TCTGGTACAGCTGGCAGGACAGCTCCCCCCGAGCCACGTAAAACTGACACAAAACGTGAC 21135 |||||||| |||||| || ||||| || || ||||| ||||| || | || | Sbjct 25325 GCTGGTACATCTGGCATGAAAGCTCGCCATTCGCAACGTAGAACTGCGCCAGCAGATGGC 25266 Query 21136 AAGGAGGGAGAGCCATCCGCGCGAGGTCCGCGGGGTTCCACGCGCACATAACGATGCGCC 21195 | || || || |||||| | || || ||||||||||||| ||| | ||| |||| Sbjct 25265 ATGGTGGTAGCGCCATCTGGTCGGTCGCCACGGGGTTCCACGCAGACAGGAGGATCCGCC 25206 Query 21196 GATCGTGGGGCCGCCTGTTAATTAGATCCACCACGTAACGCAGCTGGTCCACCCCCTGAC 21255 |||| | || | || | | ||| | ||| | |||||| || ||||| | Sbjct 25205 GATCATTCGGGTTGTTCTTCACTGTATCGATCACCTCCTTCAGCTGATCTCTCCCCTTTC 25146 Query 21256 CCTCGTAGTTGGCGTCGGCCCCCCTGTACTCCGCCCCAAAATGTCTCCACTGGAACCCGT 21315 | | || | |||| | |||| ||||||||||| || | ||| || ||||| | Sbjct 25145 CTGCATAATCCGCGTGCATATCTGTGTATTCCGCCCCAAAGTGCCGCCATTGAAACCCAT 25086 Query 21316 ACACCGGCCCCAGATCGCCCTCGCGGCGGTCCCCGAAGCCCTGCGCCGCCAAAAAGGCGC 21375 |||| || ||||| |||||| | | ||| || || ||| ||| ||| | | Sbjct 25085 ACACTGGACCCAGGTCGCCCACCTCCCTCTCCGGAAACCCGCGCGTATCCAGAAACTCTC 25026 Query 21376 GGGACCCGTGCGCGTCCCAAATTTTTACGCC----GCGGCGCGACAGTTCGGTGGAGTCG 21431 ||||||| | ||||||| || | || || |||| || | | | || ||| Sbjct 25025 TCGACCCGTTCCCGTCCCATATATGCACACCCTTTTTGGCG----AGCTTGTTTGAATCG 24970 Query 21432 GTGGAGCCCCTGATAAACCACAGCAACTCCTCCACGACGCCCCTCCAAAACACCCTTTTG 21491 ||| ||| ||||||||| | ||||||||| | ||| | | ||||||||||| || Sbjct 24969 GTGCTTCCCTGGATAAACCAGAACAACTCCTCTGCCACGGCGCGCCAAAACACCCGCTTC 24910 Query 21492 GTGGTTAACAGAGGAAAC 21509 || || || || |||||| Sbjct 24909 GTCGTCAATAGCGGAAAC 24892 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427771172280480