Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chondrus_20crispus_20[genbank_20GCA_5F000350225.2_202013-05-22] 926 sequences; 104,980,420 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq759 161 1e-34 seq898 100 4e-16 >seq759 Length=98512 Score = 161 bits (178), Expect = 1e-34 Identities = 822/1295 (63%), Gaps = 44/1295 (3%) Strand=Plus/Minus Query 79298 TGTATGTTTCATAAGGTCCTTCCTTTTCGGCTAATTCACAACTCGCCTCTAATGCTCCGT 79357 |||| || || ||||| || | || | | | ||||||||| | ||||| || | | Sbjct 48799 TGTACGTCTCGTAAGGACCCTGCTCTGAAGACAGTTCACAACTGGTCTCTACAGCGCTGA 48740 Query 79358 AATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGGCTATCAAATGGAT 79417 | || | |||||||||||| | |||||| | || | ||| | || ||||| || Sbjct 48739 AGTAGAGGGTTTCGAAAATATCCTTATTCAACTCACGAGCTCCCTCACTCTCAAACGGCA 48680 Query 79418 AATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTC 79477 | ||||||||| | |||||| | || |||| || ||||| || || | || | Sbjct 48679 TGCGCATGAGAATAAATGTGTCTGCAAGCCCCTGAATTCCGATACCAATTGGGCGGTGGC 48620 Query 79478 TCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGA 79537 | | || ||| | | |||||| | |||||||| | || | || || | ||| || | Sbjct 48619 GCATGTTGGAATTCTTAGCTTCCTGGATAGGATAGAAGTTGACGTCGATTACTTTGTTAA 48560 Query 79538 GATTCCTGACTATTA-CTTTGAC-CACATC------CTT-----TAGTTTGAGAAAATCA 79584 |||| | | | | ||| | | ||| | ||| | | ||| | | Sbjct 48559 GATTGCGCGCAACCATCTTCGTCACACGGCGAAGGGCTTCGTGATCATATGACGGAGTGG 48500 Query 79585 AA---TCGTCC--ATCTATTACAAACATGTTCAACGCGACAGATGCCAGATTACAAACGG 79639 || || ||| | | ||||||||| |||| | || | ||| |||| || ||||| | Sbjct 48499 AACCATCTTCCGGAACAATTACAAACTTGTTGAGGGCAATAGAAGCCAAGTTGCAAACAG 48440 Query 79640 CTACCTCATTAGCATCCGCATATTGTATTATTTCAGTGCAGAGGTTACTACACTTAATGG 79699 | ||||||| | | | ||| | | || || ||||| || || | | || |||| Sbjct 48439 CAACCTCATCCGGGGCAGTATACTCAACAATCTCTGTGCAAAGATTGGAAGATTTGATGG 48380 Query 79700 TTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAACGGAG 79759 |||| | ||||| || || ||||| |||||| |||||||| || || ||| ||||| Sbjct 48379 TTCCGAGGTTTTGCTGGTTGCTCTTCCGGTTACAAGCATCCTTGTAGAGCATGTACGGAT 48320 Query 79760 TACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGA--CTCGAGCCTTTATTAT 79817 | |||||||||||||| | ||| | ||| || | ||||| |||| || | || Sbjct 48319 TTCCAGTTTCAATCTGGGCTTCGAGAATAGCATACCAGATCTTTCTCGCGC-----TCAT 48265 Query 79818 AGACTTGTAT-CTCTTTTCTCTTTC--GTATTGTGTATATAATCGTTCGAACTCGTCTCC 79874 || || | ||| || ||| ||| | | || | ||| || || || Sbjct 48264 GGAACTGCGTGCTCGGCCGTCCTTCTCGTACTTTTCGTACAGCTCTTCAAATTCAGTGCC 48205 Query 79875 CCAAACATCGTCTAATCCAGGACATTCGTCAGGACACATCAACGACCACTCTCCATCATC 79934 | || ||| | | ||||| | || | ||||| | | |||||||| |||||| | Sbjct 48204 ATAGACGTCGGCCAGACCAGGGGACTCATTCGGACAGAAAAGCGACCACTGGCCATCAGC 48145 Query 79935 CTTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTC 79993 | || || ||||||||||| || || ||||| || || || || || || | | | Sbjct 48144 TTCGACGCGCTTCATAAAGAGGTCTGGGATCCATAG-GCCGTAGAAGAGGTCACGAGCCC 48086 Query 79994 TATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCC 80053 | || || || || || |||||| |||||| || || | | ||||| | |||| Sbjct 48085 TCTGTTCTTCCTTGCCATGATTCTTGCGAAGATCAAGAAAGTCGAGGATATCTGCGTGCC 48026 Query 80054 ACGGTTCCAAGTATATGGCCATAACTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATC 80113 | || ||||| || || || | | ||| || || || || || || | || | Sbjct 48025 AAGGCTCCAAATAGATAGCAAATGCACCCTTCCGCTTCCCGCCACCTTGGTCCACATACC 47966 Query 80114 TAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCC 80173 |||| |||| ||| | || | | ||| || | ||| || || || ||||| ||||| | Sbjct 47965 TAGCTGTGTCATTGAAGACACGAAGCATAGGCACAATTCCGTTCGACGTACCGTTGGTAC 47906 Query 80174 CGGAGATATAGCTTCCACT---GGCA-CGAATATTACTAATTGATAGACCTATTCCCCCT 80229 | ||| || | ||| ||| || || || || || | || || || ||| Sbjct 47905 CACGGATGTA----CGACTTTGTGCATCGGATGTTGTGGATAGACAATCCAATGCCGCCT 47850 Query 80230 GCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATGCTATCA 80289 || || || || | ||||| || || | || ||||| ||||| || ||| || Sbjct 47849 GCGGCCTTGGAAATGATAGCGCAGCGCTTGAGAGTGTCATAAATGCCTTCAATGGAGTCC 47790 Query 80290 TCAATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAAT 80349 ||| |||| | || || || || || | ||| | || | || || ||||| ||| Sbjct 47789 TCAGTCATAGTGAGAAGGAAGCAAGAGGATAGCTGGGGGCGGCAGGTGCCTGCATTGAAT 47730 Query 80350 AAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGT-CTCA--ATA 80406 | || || || || || || || || | ||||| || || || | || || Sbjct 47729 AGCGTTGGCGAGGCATGGGTGAAGAGCTTGTTGGACAGGGCATCATATGTGCCCAGGATG 47670 Query 80407 GCTGATTCTATATCCCATTGATGAATTCCTACCGCGACACGCATTAACATGTGCTGAGGT 80466 || ||| ||||| | | ||||| || || || |||||||| | ||| ||||| || Sbjct 47669 GC---TTCCATATCGCCGAGGTGAATGCCGACTGCCACACGCATGAGCATATGCTGGGGC 47613 Query 80467 CTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCAAAGTTTTAAAACCA 80526 || || || ||||| || || | || || || |||||||| ||||| ||| Sbjct 47612 CTCTCCACAATCTTTCCGTTGATGCGGAGCAGATACGAGCGCTCCAAAGTCTTAAATCCA 47553 Query 80527 AAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 80561 || |||| || ||||| || | ||||| ||||| Sbjct 47552 AAGTAGTCATACGAAAAATCCCTGTCGTAGATAAT 47518 >seq898 Length=425369 Score = 100 bits (110), Expect = 4e-16 Identities = 153/210 (73%), Gaps = 6/210 (3%) Strand=Plus/Plus Query 49956 CAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGT 50015 || ||| ||| ||||| |||| || ||||| | | || |||||||| || || || Sbjct 413338 CAGACAGGCGTGGTCGCAATGCAACCCTTCGTCACGAGAGATGAGTTCGTTAGAGAAGGT 413397 Query 50016 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAAT-GACCCAGAAA 50074 ||| || ||||| | ||||||||| || || | || |||| |||||| || || || | Sbjct 413398 GAGGCCCGGCATCAAGCCACGCTTCTTGAGGTAGAAAATGG-CGCAAAAAGAGCCCGAGA 413456 Query 50075 AGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGCTGTCAT 50134 |||| || || || || ||||||||||| || |||| |||| | ||| || |||| | Sbjct 413457 AGAAAATGCCCTCCACGGCGGCAAAGGCCACGAGTCGCTCTGC-GAACGAGCCCTGTGAG 413515 Query 50135 G-TATCCA-CTTTTGAGCCCAATCGGCCTT 50162 | ||||| | || |||||||||||||| Sbjct 413516 GAAATCCAGCGAATG-GCCCAATCGGCCTT 413544 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718260486038640