Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chondrus_20crispus_20[genbank_20GCA_5F000350225.2_202013-05-22] 926 sequences; 104,980,420 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq759 179 5e-40 >seq759 Length=98512 Score = 179 bits (198), Expect = 5e-40 Identities = 804/1259 (64%), Gaps = 36/1259 (3%) Strand=Plus/Minus Query 71413 AGTTCACAACTCGCCTCTAATGCTCCATAATAAATGGTTTCGAAAATCTTCTTATTGAGA 71472 ||||||||||| | ||||| || | | || | |||||||||||| | |||||| | Sbjct 48767 AGTTCACAACTGGTCTCTACAGCGCTGAAGTAGAGGGTTTCGAAAATATCCTTATTCAAC 48708 Query 71473 TCTTGTGCTTCCGGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCT 71532 || | ||| || || ||||| || | ||||||||| | |||||| | || Sbjct 48707 TCACGAGCTCCCTCACTCTCAAACGGCATGCGCATGAGAATAAATGTGTCTGCAAGCCCC 48648 Query 71533 TGAACGCCAATACCGATAGGTCTGTGTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGA 71592 |||| || ||||| || || | ||| | | | || ||| | | |||||| | |||||| Sbjct 48647 TGAATTCCGATACCAATTGGGCGGTGGCGCATGTTGGAATTCTTAGCTTCCTGGATAGGA 48588 Query 71593 TAATAATTAATATCTATAATTTTATTGAGATTTCTGACTATTA-CTTTGAC-CACATC-- 71648 || | || | || || | ||| || ||||| | | | | ||| | | ||| | Sbjct 48587 TAGAAGTTGACGTCGATTACTTTGTTAAGATTGCGCGCAACCATCTTCGTCACACGGCGA 48528 Query 71649 ----CTT-----TAGTTTGAGAAAATCAAA---TCTCCC--ATCTATTACAAACACGTTC 71694 ||| | | ||| | | || ||| || | | ||||||||| ||| Sbjct 48527 AGGGCTTCGTGATCATATGACGGAGTGGAACCATCTTCCGGAACAATTACAAACTTGTTG 48468 Query 71695 AAGGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCGGCATATTGTATAATT 71754 | ||||| ||| |||| || ||||| || ||||||| | | | ||| | | ||| Sbjct 48467 AGGGCAATAGAAGCCAAGTTGCAAACAGCAACCTCATCCGGGGCAGTATACTCAACAATC 48408 Query 71755 TCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTA 71814 || ||||||||||| | | ||||||||||| | ||||| || || ||||| |||| Sbjct 48407 TCTGTGCAAAGATTGGAAGATTTGATGGTTCCGAGGTTTTGCTGGTTGCTCTTCCGGTTA 48348 Query 71815 CACGCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCT 71874 || |||||||| || || || ||||| | |||||||||||||| | ||| | ||| || Sbjct 48347 CAAGCATCCTTGTAGAGCATGTACGGATTTCCAGTTTCAATCTGGGCTTCGAGAATAGCA 48288 Query 71875 TTCCAGACGACTCGAGCCTTTAT-TATATTCTTGTATCTCTTTTCTCTTTCGTATTGTGT 71933 | ||||| || || | || | | | || || || | ||||| | | Sbjct 48287 TACCAGATCTTTCTCGCGCTCATGGAACTGCGTG-CTCGGCCGTCCTTCTCGTACTTTTC 48229 Query 71934 ATATAATCGTTCGAACTCGTCTCCCCAAGCATTGTCTAATCCAGGACATTCATTCGGACA 71993 || | ||| || || || | | | | | | ||||| | ||||||||||| Sbjct 48228 GTACAGCTCTTCAAATTCAGTGCCATAGACGTCGGCCAGACCAGGGGACTCATTCGGACA 48169 Query 71994 CATCAATGACCACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAG 72053 | | ||||||| |||||| | | || || ||||||||||| || || ||||| || Sbjct 48168 GAAAAGCGACCACTGGCCATCAGCTTCGACGCGCTTCATAAAGAGGTCTGGGATCCATAG 48109 Query 72054 AGCTATA-AATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGA 72112 || || || || || | | || || || || || || |||||| |||||| | Sbjct 48108 -GCCGTAGAAGAGGTCACGAGCCCTCTGTTCTTCCTTGCCATGATTCTTGCGAAGATCAA 48050 Query 72113 GGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTT 72172 | || | | ||||| | ||||| || ||||| || || || | | ||| ||| | Sbjct 48049 GAAAGTCGAGGATATCTGCGTGCCAAGGCTCCAAATAGATAGCAAATGCACCCTTCCGCT 47990 Query 72173 TGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAA 72232 | || || || || | || ||||| |||| ||| | || | | ||| || | || Sbjct 47989 TCCCGCCACCTTGGTCCACATACCTAGCTGTGTCATTGAAGACACGAAGCATAGGCACAA 47930 Query 72233 TACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACT---GGCA-CGAATATTG 72288 | || || || | ||| ||||| || ||| || | ||| ||| || || ||| Sbjct 47929 TTCCGTTCGACGTACCGTTGGTACCACGGATGTA----CGACTTTGTGCATCGGATGTTG 47874 Query 72289 CTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTA 72348 || || | || || || ||||| || || || | ||||| || || | || Sbjct 47873 TGGATAGACAATCCAATGCCGCCTGCGGCCTTGGAAATGATAGCGCAGCGCTTGAGAGTG 47814 Query 72349 TCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGG 72408 ||||| ||||| || || || || |||| | || || || || || | ||| Sbjct 47813 TCATAAATGCCTTCAATGGAGTCCTCAGTCATAGTGAGAAGGAAGCAAGAGGATAGCTGG 47754 Query 72409 TGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAC 72468 | || | || || ||||| |||| || || || || || || || || | ||| Sbjct 47753 GGGCGGCAGGTGCCTGCATTGAATAGCGTTGGCGAGGCATGGGTGAAGAGCTTGTTGGAC 47694 Query 72469 AGTAGATTGTACGT-CTCA--ATAGCTGATTCTATATCCCATTGATGTATTCCTACCGCG 72525 || || || || | || || || ||| ||||| | | || || || || || Sbjct 47693 AGGGCATCATATGTGCCCAGGATGGC---TTCCATATCGCCGAGGTGAATGCCGACTGCC 47637 Query 72526 ACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAG 72585 |||||||| | ||||||||| || || || || ||||| || || | || || Sbjct 47636 ACACGCATGAGCATATGCTGGGGCCTCTCCACAATCTTTCCGTTGATGCGGAGCAGATAC 47577 Query 72586 GATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 72644 || |||||||| ||||| ||||| |||| || ||||| || | ||||| ||||| Sbjct 47576 GAGCGCTCCAAAGTCTTAAATCCAAAGTAGTCATACGAAAAATCCCTGTCGTAGATAAT 47518 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671131431563760