Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chondrus_20crispus_20[genbank_20GCA_5F000350225.2_202013-05-22] 926 sequences; 104,980,420 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq759 98.7 1e-15 seq387 96.9 5e-15 seq898 91.5 2e-13 seq398 89.7 8e-13 >seq759 Length=98512 Score = 98.7 bits (108), Expect = 1e-15 Identities = 290/442 (66%), Gaps = 10/442 (2%) Strand=Plus/Plus Query 96910 TCTACTTGGAACCTTGGCACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTG 96969 |||| ||||| ||||||||||| || | | |||||| | || | ||||| || || Sbjct 48011 TCTATTTGGAGCCTTGGCACGCAGATATCCTCGACTTTCTTGATCTTCGCAAGAATCATG 48070 Query 96970 GCTTTGAAGAGGCACGAGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCA 97029 || ||||| | || | ||| | || || | || ||| | ||||| | || | Sbjct 48071 GCAAGGAAGAACAGAGGGCTCGTGACCTCTTCTACGGCCTATGGATCCCAGACCTCTTTA 48130 Query 97030 TGAAGCGCGTCAACGACGGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTC 97089 ||||||||||| | | | |||| | ||| || | || || | ||| || |||| Sbjct 48131 TGAAGCGCGTCGAAGCTGATGGCCAGTGGTCGCTTTTCTGTCCGAATGAGTCCCCTGGTC 48190 Query 97090 TGTCCGATTGCTGGGGCGAAGAGTTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGCC 97149 || |||| || ||| || ||||| | |||| |||||| | || |||| Sbjct 48191 TGGCCGACGTCTATGGCACTGAATTTGAAGAGCTGTACGAAAAGTACGAGAAGGACGGCC 48250 Query 97150 GAT-ACGTGAGACGAGTCGATG--CACGAGAAC--TGTGGAAGGCCATCGTGACGGCTCA 97204 || ||| || || ||| | |||||| | ||| | || || | || || Sbjct 48251 GAGCACGC-AGT----TCCATGAGCGCGAGAAAGATCTGGTATGCTATTCTCGAAGCCCA 48305 Query 97205 GGTAGAGACTGGAACTCCGTACATTCTCTACAAGGATACCGTGAATCGCAACAGCAACCA 97264 | | || ||||||| ||||||||| |||||||||||| | || || || |||||||| Sbjct 48306 GATTGAAACTGGAAATCCGTACATGCTCTACAAGGATGCTTGTAACCGGAAGAGCAACCA 48365 Query 97265 ACGCCACTTGGGCACCATCAAGGGCTCCAATCTGTGCACGGAAATTGTAGAGTACGCCTC 97324 | || | || |||||||| |||||||| ||||| || ||||| ||||| | | Sbjct 48366 GCAAAACCTCGGAACCATCAAATCTTCCAATCTTTGCACAGAGATTGTTGAGTATACTGC 48425 Query 97325 TCCGGACGAGACGGCAGTTTGC 97346 ||||| ||| || |||||| Sbjct 48426 CCCGGATGAGGTTGCTGTTTGC 48447 >seq387 Length=288413 Score = 96.9 bits (106), Expect = 5e-15 Identities = 214/314 (68%), Gaps = 9/314 (3%) Strand=Plus/Minus Query 125256 ATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGATCC- 125314 || ||||||||||||||||||||||| || ||||||||| | || || ||| || Sbjct 56550 ATGGAGAACGTGCACTCGGAAATGTATTCACTACTGATTGATACATATATAGCCGACCCT 56491 Query 125315 GCAACGTAAACACATGCTCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAAAAGGC 125374 || | | |||| | | ||| || | || | | |||| | || |||||||| Sbjct 56490 GCGGAGAAGACACTTT-TGTTTGCGGCCGTGGAGAGCATTCCGTGCGTGCGGAAAAAGGC 56432 Query 125375 TCAATGGGTGATTCGGTGGATCGATGACGACA-AGTCTTCGTACGCCGACAGACTGGTGG 125433 | |||| | ||||||| |||| || || || || || || |||| Sbjct 56431 GGAGTGGGCTCTCAGGTGGATTAGCTCCGACGCAGGGTTTGTG----GAAAGGCTCGTGG 56376 Query 125434 CATTCGCCGCCGTAGAGGGCATCTTCTTTTC-GGGTAGTTTTGCGGCCATCTTTTGGCTC 125492 | || || ||||| ||||| || |||||||| |||| ||||||| ||| | |||||| | Sbjct 56375 CGTTTGCAGCCGTGGAGGGGATTTTCTTTTCGGGGTCGTTTTGC-GCCGTGTTTTGGATG 56317 Query 125493 AAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAG 125552 |||||| | || |||||||| || || || | |||||| ||||||| || || || Sbjct 56316 AAGAAGAGGGGGCTCATGCCTGGGCTCACCTTCTCCAACGAGCTTATATCACGGGATGAA 56257 Query 125553 GGCCTACACTGTGA 125566 || | || ||||| Sbjct 56256 GGGTTGCATTGTGA 56243 >seq898 Length=425369 Score = 91.5 bits (100), Expect = 2e-13 Identities = 116/157 (74%), Gaps = 2/157 (1%) Strand=Plus/Minus Query 125412 TCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGG-TAG 125470 |||| ||| || |||| ||||| || |||||||| |||||||| ||||| ||||| | Sbjct 413505 TCGTTCGCAGAGCGACTCGTGGCCTTTGCCGCCGTGGAGGGCATTTTCTTCTCGGGCTCT 413446 Query 125471 TTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAA 125530 ||||||| |||| || | ||||||||||| || | ||||| || || || | ||| Sbjct 413445 TTTTGCG-CCATTTTCTACCTCAAGAAGCGTGGCTTGATGCCGGGCCTCACCTTCTCTAA 413387 Query 125531 CGAGTTTATATCTCGAGACGAGGGCCTACACTGTGAC 125567 ||| | || ||||| ||||| || | || || ||| Sbjct 413386 CGAACTCATCTCTCGTGACGAAGGGTTGCATTGCGAC 413350 >seq398 Length=653314 Score = 89.7 bits (98), Expect = 8e-13 Identities = 178/261 (68%), Gaps = 2/261 (1%) Strand=Plus/Minus Query 127444 AATCCGTGCGTCAGGTGGCCTCCGTCGGGCAGATCGAGTCCCATGATTCTACCGTGCGGT 127503 || || ||||| || ||||| ||| ||||| ||||| |||||||| | | ||||| Sbjct 253926 AAGCCATGCGTGAGATGGCCGCCGGAGGGCAAGTCGAGCCCCATGATGCGGTCATGCGGG 253867 Query 127504 TTAACGATTCCAGTGTACACGGCAAAGTTGGCCATCGAGCCCGAGTACGGTTGTACACAC 127563 || | || || ||||||| ||| |||||||| | || || |||||||| || ||| Sbjct 253866 TTCAAAATGCCGGTGTACAGGGCGAAGTTGGCGGTGGAACCGGAGTACGGCTGGACATTG 253807 Query 127564 ACTCCCCATTCGGACTCGTTCAAATTGAACGCTCT-GAGACATCGCTGCTGTGCTAGCAG 127622 || ||||| || ||| | || ||| || || ||| ||| ||| | || | Sbjct 253806 ACGCCCCACGCGTCCTCTTCCAGGCCGAA-GCACTCGAGCGCGCGCCTCTGGACAAGGCG 253748 Query 127623 TTCGATGCGATCGATAAACTCGTTACCACCATAGTATCGCTTTCCGGGCCTACCCTCCGA 127682 ||||| |||||| | | || || || ||||| || || ||| |||||||| Sbjct 253747 CTCGATCTCATCGATGACGTGATTTCCGCCGTAGTAGCGGGCGCCCGGCTGGCCCTCCGA 253688 Query 127683 GTACTTGTTGATGAGACACGA 127703 |||||||||| | || |||| Sbjct 253687 GTACTTGTTGGTCAGGGACGA 253667 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741050622239760