Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chondrus_20crispus_20[genbank_20GCA_5F000350225.2_202013-05-22] 926 sequences; 104,980,420 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq135 84.2 2e-11 >seq135 Length=363025 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || || || || ||||| || || || |||||||||||| || | | |||| || Sbjct 298875 ACCAAGTGGAGAGTGGATTCCTTCTGAATGTTGTAATCGGAAAGGGTGCGGCCGTCCTCG 298934 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | || || |||||| | |||||||| || ||||| || |||||||| ||||| | Sbjct 298935 AGCTGCTTTCCAGCGAAGATCAAACGCTGCTGGTCAGGCGGGATTCCTTCCTTGTCCTGA 298994 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 || || |||| || | || ||||| || | || || || | ||| ||||| || Sbjct 298995 ATCTTAGTCTTCACGTTCTCAATGGTGTCCGAAGACTCGACCTCCAGGGTGATGGTCTTG 299054 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || || || || || ||||| ||||| Sbjct 299055 CCGGTGAGGGTCTTGACGAAAATCTGCAT 299083 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362175112581366